Non-Coding RNA Search

Ss1.1-Pig4-TMW8041L07.5

Sequence:


               
               TAGATCGCGACTGAAGCTTTTTTGTTTCTTTAATTACAGAATAGGAAAGTTTTGAGATGC
AGAATTTGAAATTAACATTCCTAAAGGAGTTGCTTGAGCATTGAACTCAACTCATTCATT
CATTTAAGAAATATTTGAGTGCTTCAGATCTCCTTATTTCAGATCTTAATTTTCTGGTAG
TGAATGAAATAGTAGAGATCCTGCCTTTGGAGCTTTCATTCTAGTAGCAAGTAGAAATAG
AGATAATTACATACATGAGAAAAATATATAATTTTGTCTTTGGTGGACAAGGCATTAAAT
CTTTTTCCCCCTTTTCTCATATTTTCTGCTATTCTACTCCTACTGTAGAGTGGTGAGATC
AAGTCCGTAGATCCCAGACTGATCCATGTGATGCTGGTGGATAATTCAACGCCTCAGAGC
GAGGTACAGTAATGAGTAATGGATAGAGTCTCTGAGCAGACTCATGAGCTTGCGTTATCT
TGTTATATAGATTCCTTATATGTGTGTTATCCATGGATGATGCCCTTTGGGTTTCAGCTG
TCACTACTGTACATTTCTTACTCTCTCCGCGGTCTCGTCTAGTTAGGGGAGGATAATCTC
AGAAAAAAACCTAGTCTGAGCAAAGCCTTTCATCATGGCTGTGTTGTCTAGCCATTTAAA
AATCCATGGCCTATTTCTTCTTACATTTTTTTCAGGACACGTAAATTTGAAAGATATAGT
AAACTAAGCTGTAAGAAGTGGTAGCAGTATTCATGACCTACCCAATAATAAGAAGTGGAA
AAGAAACTACATCTTCATTGTCTTTCCATTAAGTAGTAGTAAGCTTCAAGGAAATATGAA
ATTCCATATCCCAAGCAGAATCAAGTCAAACTGTGCCTAGCTCAGTGCTCAGCACACAGT
GGATTACTCCATAATTACTGTGAACCAGGCCAACTCTTGGTTCATTCAGAATTATCATAA
CCCGGAGTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGATCGCGACTGAAGCTTTTTTGTTTCTTTAATTACAGAATAGGAAAGTTTTGAGATGC
AGAATTTGAAATTAACATTCCTAAAGGAGTTGCTTGAGCATTGAACTCAACTCATTCATT
CATTTAAGAAATATTTGAGTGCTTCAGATCTCCTTATTTCAGATCTTAATTTTCTGGTAG
TGAATGAAATAGTAGAGATCCTGCCTTTGGAGCTTTCATTCTAGTAGCAAGTAGAAATAG
AGATAATTACATACATGAGAAAAATATATAATTTTGTCTTTGGTGGACAAGGCATTAAAT
CTTTTTCCCCCTTTTCTCATATTTTCTGCTATTCTACTCCTACTGTAGAGTGGTGAGATC
AAGTCCGTAGATCCCAGACTGATCCATGTGATGCTGGTGGATAATTCAACGCCTCAGAGC
GAGGTACAGTAATGAGTAATGGATAGAGTCTCTGAGCAGACTCATGAGCTTGCGTTATCT
TGTTATATAGATTCCTTATATGTGTGTTATCCATGGATGATGCCCTTTGGGTTTCAGCTG
TCACTACTGTACATTTCTTACTCTCTCCGCGGTCTCGTCTAGTTAGGGGAGGATAATCTC
AGAAAAAAACCTAGTCTGAGCAAAGCCTTTCATCATGGCTGTGTTGTCTAGCCATTTAAA
AATCCATGGCCTATTTCTTCTTACATTTTTTTCAGGACACGTAAATTTGAAAGATATAGT
AAACTAAGCTGTAAGAAGTGGTAGCAGTATTCATGACCTACCCAATAATAAGAAGTGGAA
AAGAAACTACATCTTCATTGTCTTTCCATTAAGTAGTAGTAAGCTTCAAGGAAATATGAA
ATTCCATATCCCAAGCAGAATCAAGTCAAACTGTGCCTAGCTCAGTGCTCAGCACACAGT
GGATTACTCCATAATTACTGTGAACCAGGCCAACTCTTGGTTCATTCAGAATTATCATAA
CCCGGAGTTCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               850-963, - strand, RNAz p=0.567911

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               850-963, - strand, RNAz p=0.567911

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-963, gnl|bosTau2|chr7 (34878717-34879672)
               

               
               20-963, gnl|Hg17|chr5 (137744790-137745727)
               

               
               20-963, gnl|Mm7|chr18 (35175089-35175943)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-963, gnl|bosTau2|chr7 (34878717-34879672)
               

               
               20-963, gnl|Hg17|chr5 (137744790-137745727)
               

               
               20-963, gnl|Mm7|chr18 (35175089-35175943)

	20-963, gnl\|bosTau2\|chr7 (34878717-34879672)
	20-963, gnl\|Hg17\|chr5 (137744790-137745727)
	20-963, gnl\|Mm7\|chr18 (35175089-35175943)