Ss1.1-Pig4-TMW8041M02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAACCGAGTGCGGTGCCGCCGTCATGTCCGAGGACTCCAGCGCCTTGCCCTGGTCCA TCAACAAGGACGATTATGAGCTGCAGGAGGTGATTGGGAGTGGAGCAACAGCTGTGGTCC AAGCAGCATATTGTACCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGA AATGTCAAACTAGCATGGATGAACTCCTGAAAGAAATTCAAGCCATGAGTCAGTGCCATC ATCCTAATATTGTGTCTTACTACACGTCTTTTGTGGTAAAAGATGAGCTGTGGCTAGTCA TGAAGCTCCTAAGTGGAGGTTCTGTTCTGGATATTATTAAGCACATTGTGGCAAAGGGGG AACATAAAAGTGGAGTCCTAGATGAAGCTACCATAGCTACAATTCTCCGAGAAGTGCTGG AGGGGTTGGAATACCTGCATAAAAATGGACAGATTCACAGAGATGTGAAGGCTGGAAATA TTCTCCTTGGAGAAGATGGCTCAGTACAGATTGCAGACTTTGGGGTTAGTGCTTTTTTAG CAACTGGTGGTGACATAACCCGAAATAAAGTGAGAAAGACCTTTGTTGGAACCCCTTGCT GGATGGCACCCGAAGTTATGGAACAGGTCCGGGGTTATGATTTCAAAGCTGACATCTGGA GTTTTGGGATCACAGCAATTGAATTGGCCACAGGGGCAGCTCCTTACCATAAATATCCAC CAATGAAGGTTTTAATGCTGACACTGCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTC AGGATAAAGAAATGCTGAAAAAATACGGAAAGTCATTTAGAAAAATGATTTCATTGTGCC TTCAAAAGGATCCAGAAAAAAGACCAACAGCAGCAGAACTGTTGAGGCACAAATTTTTCC AAAAAGCAAAGAATAAAGAATATCTTCAAGAAAAAATATTGCAGAGAGCACCAACCATTT CTGAAAGAGCCAAAAAGGTTCGGAGAGTACCGGGTTCCAGTGGCCGTCTTCATAAGACAG AAGATGGTGGCTGGGAGTGGAGTGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAG CAGCAATTTCACAACTCAGGTCTCCCAGAGTGAAAGAGTCATTAACAAATTCTGAGCTGT TTTCAACCACGCACCCTGTGGGTACTTTACTCCAAGTTCCAGAACAGATTTCTGCTCATC TACCTCAGTCCGCAGGGCAGATGCCTGCGCAGCTGACTCCGGTCTCCCTGCCGCCTGCTG TGAGTTGGCTCCAGTGCAGGCAGCCCAGGCTCAGTCTTCAGGAGCAGGTTCACAAGAAAC CAAGATCCCAATCAGTCTAGTACTAAGGTTACGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAACCGAGTGCGGTGCCGCCGTCATGTCCGAGGACTCCAGCGCCTTGCCCTGGTCCA TCAACAAGGACGATTATGAGCTGCAGGAGGTGATTGGGAGTGGAGCAACAGCTGTGGTCC AAGCAGCATATTGTACCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGA AATGTCAAACTAGCATGGATGAACTCCTGAAAGAAATTCAAGCCATGAGTCAGTGCCATC ATCCTAATATTGTGTCTTACTACACGTCTTTTGTGGTAAAAGATGAGCTGTGGCTAGTCA TGAAGCTCCTAAGTGGAGGTTCTGTTCTGGATATTATTAAGCACATTGTGGCAAAGGGGG AACATAAAAGTGGAGTCCTAGATGAAGCTACCATAGCTACAATTCTCCGAGAAGTGCTGG AGGGGTTGGAATACCTGCATAAAAATGGACAGATTCACAGAGATGTGAAGGCTGGAAATA TTCTCCTTGGAGAAGATGGCTCAGTACAGATTGCAGACTTTGGGGTTAGTGCTTTTTTAG CAACTGGTGGTGACATAACCCGAAATAAAGTGAGAAAGACCTTTGTTGGAACCCCTTGCT GGATGGCACCCGAAGTTATGGAACAGGTCCGGGGTTATGATTTCAAAGCTGACATCTGGA GTTTTGGGATCACAGCAATTGAATTGGCCACAGGGGCAGCTCCTTACCATAAATATCCAC CAATGAAGGTTTTAATGCTGACACTGCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTC AGGATAAAGAAATGCTGAAAAAATACGGAAAGTCATTTAGAAAAATGATTTCATTGTGCC TTCAAAAGGATCCAGAAAAAAGACCAACAGCAGCAGAACTGTTGAGGCACAAATTTTTCC AAAAAGCAAAGAATAAAGAATATCTTCAAGAAAAAATATTGCAGAGAGCACCAACCATTT CTGAAAGAGCCAAAAAGGTTCGGAGAGTACCGGGTTCCAGTGGCCGTCTTCATAAGACAG AAGATGGTGGCTGGGAGTGGAGTGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAG CAGCAATTTCACAACTCAGGTCTCCCAGAGTGAAAGAGTCATTAACAAATTCTGAGCTGT TTTCAACCACGCACCCTGTGGGTACTTTACTCCAAGTTCCAGAACAGATTTCTGCTCATC TACCTCAGTCCGCAGGGCAGATGCCTGCGCAGCTGACTCCGGTCTCCCTGCCGCCTGCTG TGAGTTGGCTCCAGTGCAGGCAGCCCAGGCTCAGTCTTCAGGAGCAGGTTCACAAGAAAC CAAGATCCCAATCAGTCTAGTACTAAGGTTACGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 745-1260, - strand, RNAz p=0.884278 | |
| 976-1100, + strand, RNAz p=0.91263 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 745-1260, - strand, RNAz p=0.884278 | |
| 976-1100, + strand, RNAz p=0.91263 |
| Aligned organism(s): 97 entry(ies) | More info |
| Aligned organism(s): 97 entry(ies) | Help | Less info |
| 96-209, gnl|bosTau2|chr22 (8682542-8682429) | |
| 96-209, gnl|canFam2|chr23 (10958281-10958426) | |
| 96-209, gnl|danRer3|chr2 (15512240-15512359) | |
| 96-209, gnl|dasNov1|scaffold_1052 (49052-48926) | |
| 96-209, gnl|echTel1|scaffold_319419 (11533-11409) | |
| 96-209, gnl|fr1|chrUn (68261601-68261478) | |
| 96-209, gnl|galGal2|chr2 (4338587-4338710) | |
| 96-209, gnl|hg17|chr3 (38199495-38199640) | |
| 96-209, gnl|Hg17|chr3 (38199497-38199610) | |
| 96-209, gnl|mm7|chr9 (118985126-118984977) | |
| 96-209, gnl|Mm7|chr9 (118985122-118985009) | |
| 96-209, gnl|monDom2|scaffold_76 (212380-212236) | |
| 96-209, gnl|oryCun1|scaffold_195834 (101515-101392) | |
| 96-209, gnl|panTro1|chr2 (39301877-39302022) | |
| 96-209, gnl|rheMac2|chr2 (98378870-98378725) | |
| 96-209, gnl|rn3|chr8 (124288680-124288535) | |
| 96-209, gnl|tetNig1|chr6 (3202371-3202514) | |
| 96-209, gnl|xenTro1|scaffold_1338 (127442-127310) | |
| 317-506, gnl|bosTau2|chr22 (8667766-8667577) | |
| 317-506, gnl|canFam2|chr23 (10978191-10978356) | |
| 317-506, gnl|danRer3|chr2 (15516632-15516797) | |
| 317-506, gnl|dasNov1|scaffold_58784 (5887-5722) | |
| 317-506, gnl|echTel1|scaffold_292888 (88449-88284) | |
| 317-506, gnl|fr1|chrUn (68259652-68259506) | |
| 317-506, gnl|galGal2|chr2 (4362567-4362719) | |
| 317-506, gnl|hg17|chr3 (38215215-38215380) | |
| 317-506, gnl|Hg17|chr3 (38215215-38215378) | |
| 317-506, gnl|loxAfr1|scaffold_21810 (34721-34556) | |
| 317-506, gnl|mm7|chr9 (118964895-118964731) | |
| 317-506, gnl|Mm7|chr9 (118964893-118964712) | |
| 317-506, gnl|monDom2|scaffold_76 (178079-177917) | |
| 317-506, gnl|oryCun1|scaffold_143557 (2649-2499) | |
| 317-506, gnl|panTro1|chr2 (39317533-39317698) | |
| 317-506, gnl|rheMac2|chr2 (98361371-98361206) | |
| 317-506, gnl|rn3|chr8 (124268476-124268313) | |
| 317-506, gnl|tetNig1|chr6 (3209455-3209602) | |
| 317-506, gnl|xenTro1|scaffold_1338 (122364-122202) | |
| 515-635, gnl|bosTau2|chr22 (8645428-8645308) | |
| 515-635, gnl|canFam2|chr23 (11003723-11003853) | |
| 515-635, gnl|danRer3|chr2 (15521014-15521145) | |
| 515-635, gnl|dasNov1|scaffold_71861 (9343-9457) | |
| 515-635, gnl|echTel1|scaffold_255365 (9930-10060) | |
| 515-635, gnl|fr1|chrUn (68258969-68258848) | |
| 515-635, gnl|galGal2|chr2 (4384917-4385048) | |
| 515-635, gnl|hg17|chr3 (38238054-38238185) | |
| 515-635, gnl|Hg17|chr3 (38238071-38238191) | |
| 515-635, gnl|loxAfr1|scaffold_4349 (41663-41536) | |
| 515-635, gnl|mm7|chr9 (118949009-118948883) | |
| 515-635, gnl|Mm7|chr9 (118948995-118948875) | |
| 515-635, gnl|monDom2|scaffold_76 (171001-170870) | |
| 515-635, gnl|oryCun1|scaffold_115869 (7660-7791) | |
| 515-635, gnl|panTro1|chr2 (39340474-39340605) | |
| 515-635, gnl|rheMac2|chr2 (98336860-98336729) | |
| 515-635, gnl|rn3|chr8 (124255655-124255531) | |
| 515-635, gnl|tetNig1|chr6 (3213407-3213529) | |
| 515-635, gnl|xenTro1|scaffold_1338 (118697-118567) | |
| 727-862, gnl|bosTau2|chr22 (8639411-8639276) | |
| 727-862, gnl|canFam2|chr23 (11008532-11008674) | |
| 727-862, gnl|danRer3|chr2 (15522994-15523135) | |
| 727-862, gnl|dasNov1|scaffold_71861 (9561-9690) | |
| 727-862, gnl|echTel1|scaffold_315258 (5581-5721) | |
| 727-862, gnl|fr1|chrUn (68258532-68258393) | |
| 727-862, gnl|galGal2|chr2 (4391379-4391521) | |
| 727-862, gnl|hg17|chr3 (38241062-38241204) | |
| 727-862, gnl|Hg17|chr3 (38241064-38241199) | |
| 727-862, gnl|loxAfr1|scaffold_81329 (6883-7025) | |
| 727-862, gnl|mm7|chr9 (118945093-118944951) | |
| 727-862, gnl|Mm7|chr9 (118945089-118944954) | |
| 727-862, gnl|monDom2|scaffold_76 (163204-163062) | |
| 727-862, gnl|oryCun1|scaffold_125133 (9139-8997) | |
| 727-862, gnl|panTro1|chr2 (39343480-39343622) | |
| 727-862, gnl|rheMac2|chr2 (98333842-98333700) | |
| 727-862, gnl|rn3|chr8 (124251377-124251238) | |
| 727-862, gnl|tetNig1|chr6 (3213827-3213967) | |
| 727-862, gnl|xenTro1|scaffold_1338 (115776-115636) | |
| 976-1100, gnl|bosTau2|chr22 (8632059-8631935) | |
| 976-1100, gnl|canFam2|chr23 (11016958-11017104) | |
| 976-1100, gnl|danRer3|chr2 (15523947-15524075) | |
| 976-1100, gnl|dasNov1|scaffold_63153 (6416-6569) | |
| 976-1100, gnl|echTel1|scaffold_292888 (48258-48105) | |
| 976-1100, gnl|fr1|chrUn (68257978-68257846) | |
| 976-1100, gnl|galGal2|chr2 (4395276-4395433) | |
| 976-1100, gnl|hg17|chr3 (38253313-38253466) | |
| 976-1100, gnl|Hg17|chr3 (38253332-38253456) | |
| 976-1100, gnl|loxAfr1|scaffold_21810 (730-577) | |
| 976-1100, gnl|mm7|chr9 (118935108-118934959) | |
| 976-1100, gnl|Mm7|chr9 (118935091-118934967) | |
| 976-1100, gnl|monDom2|scaffold_76 (157721-157566) | |
| 976-1100, gnl|oryCun1|scaffold_184171 (2702-2549) | |
| 976-1100, gnl|panTro1|chr2 (39355829-39355982) | |
| 976-1100, gnl|rheMac2|chr2 (98321032-98320879) | |
| 976-1100, gnl|rn3|chr8 (124240550-124240402) | |
| 976-1100, gnl|tetNig1|chr6 (3215132-3215252) | |
| 976-1100, gnl|xenTro1|scaffold_1338 (113100-112971) | |
| 1135-1260, gnl|bosTau2|chr22 (8623139-8623014) | |
| 1135-1260, gnl|Hg17|chr3 (38262568-38262693) | |
| 1135-1260, gnl|Mm7|chr9 (118927334-118927209) |
| Aligned organism(s): 97 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-209, gnl|bosTau2|chr22 (8682542-8682429) | |
| 96-209, gnl|canFam2|chr23 (10958281-10958426) | |
| 96-209, gnl|danRer3|chr2 (15512240-15512359) | |
| 96-209, gnl|dasNov1|scaffold_1052 (49052-48926) | |
| 96-209, gnl|echTel1|scaffold_319419 (11533-11409) | |
| 96-209, gnl|fr1|chrUn (68261601-68261478) | |
| 96-209, gnl|galGal2|chr2 (4338587-4338710) | |
| 96-209, gnl|hg17|chr3 (38199495-38199640) | |
| 96-209, gnl|Hg17|chr3 (38199497-38199610) | |
| 96-209, gnl|mm7|chr9 (118985126-118984977) | |
| 96-209, gnl|Mm7|chr9 (118985122-118985009) | |
| 96-209, gnl|monDom2|scaffold_76 (212380-212236) | |
| 96-209, gnl|oryCun1|scaffold_195834 (101515-101392) | |
| 96-209, gnl|panTro1|chr2 (39301877-39302022) | |
| 96-209, gnl|rheMac2|chr2 (98378870-98378725) | |
| 96-209, gnl|rn3|chr8 (124288680-124288535) | |
| 96-209, gnl|tetNig1|chr6 (3202371-3202514) | |
| 96-209, gnl|xenTro1|scaffold_1338 (127442-127310) | |
| 317-506, gnl|bosTau2|chr22 (8667766-8667577) | |
| 317-506, gnl|canFam2|chr23 (10978191-10978356) | |
| 317-506, gnl|danRer3|chr2 (15516632-15516797) | |
| 317-506, gnl|dasNov1|scaffold_58784 (5887-5722) | |
| 317-506, gnl|echTel1|scaffold_292888 (88449-88284) | |
| 317-506, gnl|fr1|chrUn (68259652-68259506) | |
| 317-506, gnl|galGal2|chr2 (4362567-4362719) | |
| 317-506, gnl|hg17|chr3 (38215215-38215380) | |
| 317-506, gnl|Hg17|chr3 (38215215-38215378) | |
| 317-506, gnl|loxAfr1|scaffold_21810 (34721-34556) | |
| 317-506, gnl|mm7|chr9 (118964895-118964731) | |
| 317-506, gnl|Mm7|chr9 (118964893-118964712) | |
| 317-506, gnl|monDom2|scaffold_76 (178079-177917) | |
| 317-506, gnl|oryCun1|scaffold_143557 (2649-2499) | |
| 317-506, gnl|panTro1|chr2 (39317533-39317698) | |
| 317-506, gnl|rheMac2|chr2 (98361371-98361206) | |
| 317-506, gnl|rn3|chr8 (124268476-124268313) | |
| 317-506, gnl|tetNig1|chr6 (3209455-3209602) | |
| 317-506, gnl|xenTro1|scaffold_1338 (122364-122202) | |
| 515-635, gnl|bosTau2|chr22 (8645428-8645308) | |
| 515-635, gnl|canFam2|chr23 (11003723-11003853) | |
| 515-635, gnl|danRer3|chr2 (15521014-15521145) | |
| 515-635, gnl|dasNov1|scaffold_71861 (9343-9457) | |
| 515-635, gnl|echTel1|scaffold_255365 (9930-10060) | |
| 515-635, gnl|fr1|chrUn (68258969-68258848) | |
| 515-635, gnl|galGal2|chr2 (4384917-4385048) | |
| 515-635, gnl|hg17|chr3 (38238054-38238185) | |
| 515-635, gnl|Hg17|chr3 (38238071-38238191) | |
| 515-635, gnl|loxAfr1|scaffold_4349 (41663-41536) | |
| 515-635, gnl|mm7|chr9 (118949009-118948883) | |
| 515-635, gnl|Mm7|chr9 (118948995-118948875) | |
| 515-635, gnl|monDom2|scaffold_76 (171001-170870) | |
| 515-635, gnl|oryCun1|scaffold_115869 (7660-7791) | |
| 515-635, gnl|panTro1|chr2 (39340474-39340605) | |
| 515-635, gnl|rheMac2|chr2 (98336860-98336729) | |
| 515-635, gnl|rn3|chr8 (124255655-124255531) | |
| 515-635, gnl|tetNig1|chr6 (3213407-3213529) | |
| 515-635, gnl|xenTro1|scaffold_1338 (118697-118567) | |
| 727-862, gnl|bosTau2|chr22 (8639411-8639276) | |
| 727-862, gnl|canFam2|chr23 (11008532-11008674) | |
| 727-862, gnl|danRer3|chr2 (15522994-15523135) | |
| 727-862, gnl|dasNov1|scaffold_71861 (9561-9690) | |
| 727-862, gnl|echTel1|scaffold_315258 (5581-5721) | |
| 727-862, gnl|fr1|chrUn (68258532-68258393) | |
| 727-862, gnl|galGal2|chr2 (4391379-4391521) | |
| 727-862, gnl|hg17|chr3 (38241062-38241204) | |
| 727-862, gnl|Hg17|chr3 (38241064-38241199) | |
| 727-862, gnl|loxAfr1|scaffold_81329 (6883-7025) | |
| 727-862, gnl|mm7|chr9 (118945093-118944951) | |
| 727-862, gnl|Mm7|chr9 (118945089-118944954) | |
| 727-862, gnl|monDom2|scaffold_76 (163204-163062) | |
| 727-862, gnl|oryCun1|scaffold_125133 (9139-8997) | |
| 727-862, gnl|panTro1|chr2 (39343480-39343622) | |
| 727-862, gnl|rheMac2|chr2 (98333842-98333700) | |
| 727-862, gnl|rn3|chr8 (124251377-124251238) | |
| 727-862, gnl|tetNig1|chr6 (3213827-3213967) | |
| 727-862, gnl|xenTro1|scaffold_1338 (115776-115636) | |
| 976-1100, gnl|bosTau2|chr22 (8632059-8631935) | |
| 976-1100, gnl|canFam2|chr23 (11016958-11017104) | |
| 976-1100, gnl|danRer3|chr2 (15523947-15524075) | |
| 976-1100, gnl|dasNov1|scaffold_63153 (6416-6569) | |
| 976-1100, gnl|echTel1|scaffold_292888 (48258-48105) | |
| 976-1100, gnl|fr1|chrUn (68257978-68257846) | |
| 976-1100, gnl|galGal2|chr2 (4395276-4395433) | |
| 976-1100, gnl|hg17|chr3 (38253313-38253466) | |
| 976-1100, gnl|Hg17|chr3 (38253332-38253456) | |
| 976-1100, gnl|loxAfr1|scaffold_21810 (730-577) | |
| 976-1100, gnl|mm7|chr9 (118935108-118934959) | |
| 976-1100, gnl|Mm7|chr9 (118935091-118934967) | |
| 976-1100, gnl|monDom2|scaffold_76 (157721-157566) | |
| 976-1100, gnl|oryCun1|scaffold_184171 (2702-2549) | |
| 976-1100, gnl|panTro1|chr2 (39355829-39355982) | |
| 976-1100, gnl|rheMac2|chr2 (98321032-98320879) | |
| 976-1100, gnl|rn3|chr8 (124240550-124240402) | |
| 976-1100, gnl|tetNig1|chr6 (3215132-3215252) | |
| 976-1100, gnl|xenTro1|scaffold_1338 (113100-112971) | |
| 1135-1260, gnl|bosTau2|chr22 (8623139-8623014) | |
| 1135-1260, gnl|Hg17|chr3 (38262568-38262693) | |
| 1135-1260, gnl|Mm7|chr9 (118927334-118927209) |