Non-Coding RNA Search

Ss1.1-Pig4-TMW8041N04.5

Sequence:


               
               CTGGTAGGGTGGTGTCTTCCATTCTATTTCGGTTGGAAATAATAGATTGTATGTTTACCA
CACTTCAGCACAACTTACTCTTGGAGAAGCAAACACTTCTCCTTTTCACCTTTGCCAAGA
TGTTCCTCAGCAACTTTGTAGAATCTCAAACAGTGGGGGTTACCTTATCCTGCAGCCTTC
ATTCACTTAAGTGCTGTTGGAGGTTTAATCTGCCTGGGCCAATGAGTACCTCATGGGAGA
GGGGAGGACGAAGGCCTGTGGCTTACCTGCTTCTTTTATGATATGATGGAAAGTGTTATA
TTAGAGAATTTATTTAATTTTTTGGACTGCGGCCACAGCATGTGAAAGTTCCTGGGCCAA
GGATCGAACCCACACCACAGCAGTGACAATGCCAGATCCTTAACTTGCTGAAGCACCAGG
GAGTTCCTTTTAGTTTTATTTATTTATTTATTTATTTTTTGAGATTTTAAATGGTTAAGA
TTTATACTCTTTACTGCTTTGAGGTATGAGTTATGGGAAAGGAGAACCGAGACATCTAGA
GGTGTTCCTGGTGGTGACTCTGGATTAGCTCTTTGCTCAGATTTGCTCAGTACTGTGAAC
TATACAAGCAGGTCCAGAGACCATGGCAGGGACTAGACTGTTCCACTTACTGTTATTTAA
CTCGAAGGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTAGGGTGGTGTCTTCCATTCTATTTCGGTTGGAAATAATAGATTGTATGTTTACCA
CACTTCAGCACAACTTACTCTTGGAGAAGCAAACACTTCTCCTTTTCACCTTTGCCAAGA
TGTTCCTCAGCAACTTTGTAGAATCTCAAACAGTGGGGGTTACCTTATCCTGCAGCCTTC
ATTCACTTAAGTGCTGTTGGAGGTTTAATCTGCCTGGGCCAATGAGTACCTCATGGGAGA
GGGGAGGACGAAGGCCTGTGGCTTACCTGCTTCTTTTATGATATGATGGAAAGTGTTATA
TTAGAGAATTTATTTAATTTTTTGGACTGCGGCCACAGCATGTGAAAGTTCCTGGGCCAA
GGATCGAACCCACACCACAGCAGTGACAATGCCAGATCCTTAACTTGCTGAAGCACCAGG
GAGTTCCTTTTAGTTTTATTTATTTATTTATTTATTTTTTGAGATTTTAAATGGTTAAGA
TTTATACTCTTTACTGCTTTGAGGTATGAGTTATGGGAAAGGAGAACCGAGACATCTAGA
GGTGTTCCTGGTGGTGACTCTGGATTAGCTCTTTGCTCAGATTTGCTCAGTACTGTGAAC
TATACAAGCAGGTCCAGAGACCATGGCAGGGACTAGACTGTTCCACTTACTGTTATTTAA
CTCGAAGGGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-190, + strand, RNAz p=0.999781

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-190, + strand, RNAz p=0.999781

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-213, gnl|bosTau2|chr29 (36836215-36836430)
               

               
               1-213, gnl|Hg17|chr11 (66200638-66200426)
               

               
               1-213, gnl|Mm7|chr19 (4652557-4652749)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-213, gnl|bosTau2|chr29 (36836215-36836430)
               

               
               1-213, gnl|Hg17|chr11 (66200638-66200426)
               

               
               1-213, gnl|Mm7|chr19 (4652557-4652749)

	1-213, gnl\|bosTau2\|chr29 (36836215-36836430)
	1-213, gnl\|Hg17\|chr11 (66200638-66200426)
	1-213, gnl\|Mm7\|chr19 (4652557-4652749)