Non-Coding RNA Search

Ss1.1-Pig4-TMW8042B09.5

Sequence:


               
               AGGATGGGGTGGGGGCGCCGAGTCGGGAATTTGGAGCCCAAGATGTAAAAGTGGTCGGGA
AGCTAGGGGATGATTCATAAGAAAAGATTGTTTGCCCTCTCTGCAGGCTAGACAGTGTTC
CTGGGGCCACAGAGGTGCTGGGCTGAGGGGGGAGGGGGCGCTGAGAGTGGGCGGGTTGCA
GGCTGAGAAACTTTGGCGCCGGCTTTGAGGGGCAGGGTCCTTGCGCCCTCTGCTGAGCTA
TACTGGCACTGAGCCTCCCTGGCCAGCGCTTCTCCGCGCAGGAGTCGAAGCGGGAAAATG
GGGTTGTTGCCTGGTGTGGACCCCACCTCTAGACTTTGAAAATAAAGTTGGGGACGGGGT
AGCTCCAGTCTCTAAAAGAAGTGGCCGGTCGGGGGAAATTGCTTAGGGTGGCCCGCCACC
TAGTGGCCGCCTGGGTGGACGCTCCGCGGTGGGCGTGATTAACATCATTTACGGACTTTT
TGGATCTTTGGTTAACTAACTTCTTTGGCGGACTTTTGGGTTCTTTGGCTAAGGAGTGAC
CCCGGGCACTGGCTGGCTTTGGGAAACGGGATTTGTCCTTGGGAGAGGCTGTTAGAGATG
TCTGGGAAGTGGAGGTTAGGGCGTATCCTGCTCTTTTTAAAGTCTGGTACATTTTAAGTC
TCTGGGCGGGATCCCACGCCCGTTAGCTCCTCCCCATCCTCCTAGCCCCGCCCACACCAT
CCCACCTGCCCCGGGAATGAGACGGAATCCTGCCTGGACCTCCCATCTCTCCTCCCAGCC
CCTCCTCCGGTCTCCACCCAAACCACTCCCCACAAGCCTGCCCTCCGGACCAGGCGCCTC
CGGTTCTCTCTCTTTCCCACTCCCCCACTCCCCGCTCCCCCACCCGATGGCTTTTTATTT
CACTTGGCTTCCGCGCCAATGCGCTGAGGTTGGAGTTGGAAGCAACTCCAGCCTAAAGCT
TTGTTTAAATTCCTGAGAACTGGAAAGAGTTATAGCCGACCTGGCCCGGCGCCTCAGCCC
TGTCACTGGTGCTGATGAGAAGCAGATGAGCTTTTAAGGATTTGGGGAAAGGAAAAACAA
GGGGACCGGGGGGGGGGGGGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATGGGGTGGGGGCGCCGAGTCGGGAATTTGGAGCCCAAGATGTAAAAGTGGTCGGGA
AGCTAGGGGATGATTCATAAGAAAAGATTGTTTGCCCTCTCTGCAGGCTAGACAGTGTTC
CTGGGGCCACAGAGGTGCTGGGCTGAGGGGGGAGGGGGCGCTGAGAGTGGGCGGGTTGCA
GGCTGAGAAACTTTGGCGCCGGCTTTGAGGGGCAGGGTCCTTGCGCCCTCTGCTGAGCTA
TACTGGCACTGAGCCTCCCTGGCCAGCGCTTCTCCGCGCAGGAGTCGAAGCGGGAAAATG
GGGTTGTTGCCTGGTGTGGACCCCACCTCTAGACTTTGAAAATAAAGTTGGGGACGGGGT
AGCTCCAGTCTCTAAAAGAAGTGGCCGGTCGGGGGAAATTGCTTAGGGTGGCCCGCCACC
TAGTGGCCGCCTGGGTGGACGCTCCGCGGTGGGCGTGATTAACATCATTTACGGACTTTT
TGGATCTTTGGTTAACTAACTTCTTTGGCGGACTTTTGGGTTCTTTGGCTAAGGAGTGAC
CCCGGGCACTGGCTGGCTTTGGGAAACGGGATTTGTCCTTGGGAGAGGCTGTTAGAGATG
TCTGGGAAGTGGAGGTTAGGGCGTATCCTGCTCTTTTTAAAGTCTGGTACATTTTAAGTC
TCTGGGCGGGATCCCACGCCCGTTAGCTCCTCCCCATCCTCCTAGCCCCGCCCACACCAT
CCCACCTGCCCCGGGAATGAGACGGAATCCTGCCTGGACCTCCCATCTCTCCTCCCAGCC
CCTCCTCCGGTCTCCACCCAAACCACTCCCCACAAGCCTGCCCTCCGGACCAGGCGCCTC
CGGTTCTCTCTCTTTCCCACTCCCCCACTCCCCGCTCCCCCACCCGATGGCTTTTTATTT
CACTTGGCTTCCGCGCCAATGCGCTGAGGTTGGAGTTGGAAGCAACTCCAGCCTAAAGCT
TTGTTTAAATTCCTGAGAACTGGAAAGAGTTATAGCCGACCTGGCCCGGCGCCTCAGCCC
TGTCACTGGTGCTGATGAGAAGCAGATGAGCTTTTAAGGATTTGGGGAAAGGAAAAACAA
GGGGACCGGGGGGGGGGGGGAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-194, + strand, RNAz p=0.697665

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-194, + strand, RNAz p=0.697665

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-495, gnl|bosTau2|chr19 (29172960-29173464)
               

               
               3-495, gnl|Hg17|chr17 (45633465-45632946)
               

               
               3-495, gnl|Mm7|chr11 (95045778-95046303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-495, gnl|bosTau2|chr19 (29172960-29173464)
               

               
               3-495, gnl|Hg17|chr17 (45633465-45632946)
               

               
               3-495, gnl|Mm7|chr11 (95045778-95046303)

	3-495, gnl\|bosTau2\|chr19 (29172960-29173464)
	3-495, gnl\|Hg17\|chr17 (45633465-45632946)
	3-495, gnl\|Mm7\|chr11 (95045778-95046303)