Non-Coding RNA Search

Ss1.1-Pig4-TMW8042C12.5

Sequence:


               
               CAGTCCTACAACACTGCCACCCGCCAGTGGCTCTACCTCAAGGAGAACACATCCAAGTCG
GGCCTGAACTTGACGTGCGCGCTTCACAACGACGGCATCTATATCATGAGCAGAGACGTG
ACCCTGTCCACCAGCCTGGAACATCGCGTCTTCCTCAAGTACAACATCTTTAACGACAGT
TGGGAAGCCTTCCGGCGTTTCCCAGCCTTTGGACACAACTTGCTGGTCTCCTCCCTTTAT
CTGCCCAATAAGGCAGAAACATGACCAAATTAGTATTTGAAAGAAACCTGGATCAAGACC
AAAAAAAAAAAAAAGTGTCCATTTTCAAGCGAAACTGCTTTTTAAAGGGGACATGTGGGT
TTTAGGTCACACGTACAAAAGGTGTAAATAAGCTTACTTGAACCAGTTACTTGAAAACTT
GTGGTGAAAAGAGACCAACTTTATTATTTTTTTAATTACTGATTTTTAAAATGATGGGAG
CAAATCCATGATACTGTTTTCGTACAAATGTGATACCCTTAGGCGGAGGACCGAAACTGA
TCCTCAAAAAGAAGATTCATTGTGCCTGCTTTGTAAAGGGCCAAAGTCAGTAATTGGCAT
GAATAGTTAAGATGATTTTAAAATCTGTTTTCTTTAGGTCACTTGAAATAGTGTTGCTAC
CTTAAGTGAGAGGTTTTTTTTTTTTTTTTTTGGTTATTACTTTACTTGACAAACATTAAC
ACCGTCTTTCTCCCCTCTTCTCCCCCAGTCACACCCGTATATACTTGCAGTGTGTTCAAA
ATAGGGTTCTATGTTCATAATAGTGTATTTGCACATGACTTTTCAGGAAATTTACCCTGA
TGGAACCCAGCATCCATTCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCCTACAACACTGCCACCCGCCAGTGGCTCTACCTCAAGGAGAACACATCCAAGTCG
GGCCTGAACTTGACGTGCGCGCTTCACAACGACGGCATCTATATCATGAGCAGAGACGTG
ACCCTGTCCACCAGCCTGGAACATCGCGTCTTCCTCAAGTACAACATCTTTAACGACAGT
TGGGAAGCCTTCCGGCGTTTCCCAGCCTTTGGACACAACTTGCTGGTCTCCTCCCTTTAT
CTGCCCAATAAGGCAGAAACATGACCAAATTAGTATTTGAAAGAAACCTGGATCAAGACC
AAAAAAAAAAAAAAGTGTCCATTTTCAAGCGAAACTGCTTTTTAAAGGGGACATGTGGGT
TTTAGGTCACACGTACAAAAGGTGTAAATAAGCTTACTTGAACCAGTTACTTGAAAACTT
GTGGTGAAAAGAGACCAACTTTATTATTTTTTTAATTACTGATTTTTAAAATGATGGGAG
CAAATCCATGATACTGTTTTCGTACAAATGTGATACCCTTAGGCGGAGGACCGAAACTGA
TCCTCAAAAAGAAGATTCATTGTGCCTGCTTTGTAAAGGGCCAAAGTCAGTAATTGGCAT
GAATAGTTAAGATGATTTTAAAATCTGTTTTCTTTAGGTCACTTGAAATAGTGTTGCTAC
CTTAAGTGAGAGGTTTTTTTTTTTTTTTTTTGGTTATTACTTTACTTGACAAACATTAAC
ACCGTCTTTCTCCCCTCTTCTCCCCCAGTCACACCCGTATATACTTGCAGTGTGTTCAAA
ATAGGGTTCTATGTTCATAATAGTGTATTTGCACATGACTTTTCAGGAAATTTACCCTGA
TGGAACCCAGCATCCATTCCTCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-276, - strand, RNAz p=0.981824

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-276, - strand, RNAz p=0.981824

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-864, gnl|bosTau2|chr5 (50486616-50487470)
               

               
               1-864, gnl|Hg17|chr12 (27842103-27842964)
               

               
               1-864, gnl|Mm7|chr6 (147186202-147187262)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr5 (50486616-50487470)
               

               
               1-864, gnl|Hg17|chr12 (27842103-27842964)
               

               
               1-864, gnl|Mm7|chr6 (147186202-147187262)

	1-864, gnl\|bosTau2\|chr5 (50486616-50487470)
	1-864, gnl\|Hg17\|chr12 (27842103-27842964)
	1-864, gnl\|Mm7\|chr6 (147186202-147187262)