Non-Coding RNA Search

Ss1.1-Pig4-TMW8042F18.3

Sequence:


               
               TGAAACTCATGGATGGAGTTAAATGAAAAACTCCTGACTCATTCTAAACACATGCCACTT
TCTACTACTTCTTGGAAGAAATATTGAATGCAATAAAATACTCAGCTGTGTGTAAGTGAT
TTGAGTTCCGTGTATTGCTTTTTCTTTTTGTGCCTAAGTATATATCAGTAATTATCCTAA
TTTGATTTGCTGCCATTTGAATAAAATGAAAAAAACCAGCACTTGTCTTAGTTTCCAACT
GACTTCATTTTTTCCTGCTAGCAGATTTTCTGTCTAGTTATGTCTCAGATGGAATGACTT
GACAGATTCCTTTTAAGTTAAAATCATTGACTCAATTATGGAATATCCTCTTTGTGCATA
ATGATATTGTGAGACATCCTGAAGGAGGACAGACATGATGTCTTCCCCAAATGATCTCAT
TATCTAGTTTAGGAGATGAAATAAACTGATGGGAAACAAACAGAGAGTGACACACTTTTG
GTGTAGCATCCGGGTTTGGCGATCCCTTCTACTAAACTGTATTCTGTGTAGATTAAACAT
AACCCTTTCTTATAATGTATCTAATTCTCCTAGTTCATTGTTTTTGTGGAGAAAGGCACT
GAACCACATTTTGGGGTGGAAGCATCTAGAGATGATTATAGCTTTCTTTCTTTTGAATCA
TTGTTATTGTGGTAAAATACACATAACATACTATTTATCATTTTGACCATTCATACGTGT
AGAAATTTGATGGCATTACATACATTCATAATGTTTTGTAACCATCATCACTGTGTGTAC
TCAAAACTTTCTATCATCCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAACTCATGGATGGAGTTAAATGAAAAACTCCTGACTCATTCTAAACACATGCCACTT
TCTACTACTTCTTGGAAGAAATATTGAATGCAATAAAATACTCAGCTGTGTGTAAGTGAT
TTGAGTTCCGTGTATTGCTTTTTCTTTTTGTGCCTAAGTATATATCAGTAATTATCCTAA
TTTGATTTGCTGCCATTTGAATAAAATGAAAAAAACCAGCACTTGTCTTAGTTTCCAACT
GACTTCATTTTTTCCTGCTAGCAGATTTTCTGTCTAGTTATGTCTCAGATGGAATGACTT
GACAGATTCCTTTTAAGTTAAAATCATTGACTCAATTATGGAATATCCTCTTTGTGCATA
ATGATATTGTGAGACATCCTGAAGGAGGACAGACATGATGTCTTCCCCAAATGATCTCAT
TATCTAGTTTAGGAGATGAAATAAACTGATGGGAAACAAACAGAGAGTGACACACTTTTG
GTGTAGCATCCGGGTTTGGCGATCCCTTCTACTAAACTGTATTCTGTGTAGATTAAACAT
AACCCTTTCTTATAATGTATCTAATTCTCCTAGTTCATTGTTTTTGTGGAGAAAGGCACT
GAACCACATTTTGGGGTGGAAGCATCTAGAGATGATTATAGCTTTCTTTCTTTTGAATCA
TTGTTATTGTGGTAAAATACACATAACATACTATTTATCATTTTGACCATTCATACGTGT
AGAAATTTGATGGCATTACATACATTCATAATGTTTTGTAACCATCATCACTGTGTGTAC
TCAAAACTTTCTATCATCCCCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               349-468, + strand, RNAz p=0.546886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               349-468, + strand, RNAz p=0.546886

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-557, gnl|bosTau2|chr10 (26227595-26228161)
               

               
               3-557, gnl|Hg17|chr14 (47138487-47137896)
               


               
               562-803, gnl|bosTau2|chr10 (26228485-26228724)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-557, gnl|bosTau2|chr10 (26227595-26228161)
               

               
               3-557, gnl|Hg17|chr14 (47138487-47137896)
               


               
               562-803, gnl|bosTau2|chr10 (26228485-26228724)

	3-557, gnl\|bosTau2\|chr10 (26227595-26228161)
	3-557, gnl\|Hg17\|chr14 (47138487-47137896)

	562-803, gnl\|bosTau2\|chr10 (26228485-26228724)