Non-Coding RNA Search

Ss1.1-Pig4-TMW8042G04.3

Sequence:


               
               AAAGTACAAGCATTTTGAGTCCATTCATGCAGGCAACTTGGTATTGTCTGATAGTTTTCC
AGGGTTTCTCTCCTTTTTGTTTTCTCTCATCCCTATTTATAATTGAAGGGGTCACATTTT
AATTTAATAAGTATGAGACGAATTAAAATGCCAGTAAAGTTTTATAGTAGGCTGCTTTTG
GAATATCAAGTCAGTAAAATGTTGGAACATAATAGAAAGTGCTTTATAATGAATGTCATT
TTAGAATTTTATTTTTTTCAAGATTCTACTCAACATGTCCCTTCAGAAACAAGTGAGGAC
CCCGAAGTTGAGGTGACTATTGAAGGTTAGTCATCTAAAAGCCTTGATTCCAAAAGTTTA
CTTCTGGTCATAAAACTACTTGTCACATTCCCATTGCGAAGTATGCATTTCATTCATTTT
TAAGGAAACTTGTGAGAAAAGACGGCAGCATATATGTGTGTGTGTGACCACAGCAGCCCG
CCTCCCACCCGCAGGCCCAGTGGCCCGGTGCTGGGGGCTTAGACGAGAGAGGGCGCCCCG
AGGGGGGCGGTGCGCCAGCCTTGGGAGGAGAGCGTTAAACGGAGGCTCTGACCAGGCTGC
ACGTTGCAGCCTGCTCCCGGGCTGTGACGGAAGAGACCTCTGTGCAGCCCTGACTCTCTG
GTGTCTCCTGCAGGAGCGTGGAGGAGAACGTGTCTATAGTTCAGTCACTTTCTCAAGTGA
GCTCCCCCCAGAATGCCCTCCGAGGCCAGCCTATAGCTTGTCCTTCAGAACTTCGGAAGC
AGCAGCTGCAGAAATCAGCTCATTTCCGCATATCGTTACAGTTGCTTCAAGCCTGTTTTG
TTTTTGTTTCTGTCAAAGGTAGTAAGTACTTGAATGTCGAGGAAGCAGCTTGTTCTGAAG
TATTTAAAGATTCAGCTAATACTATTACTAACAGGATCATGCTTCATACTTAAGCATTAT
TAAATATGTATTGGGTTTTTTTCCTTTTTAGTTATCTCACACTATACATTTTTTCCTTTC
AAAGTAATTCTTTTCTAAGGGAAAAATAAAAGTTTTTATTTCTACAACTACATGCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTACAAGCATTTTGAGTCCATTCATGCAGGCAACTTGGTATTGTCTGATAGTTTTCC
AGGGTTTCTCTCCTTTTTGTTTTCTCTCATCCCTATTTATAATTGAAGGGGTCACATTTT
AATTTAATAAGTATGAGACGAATTAAAATGCCAGTAAAGTTTTATAGTAGGCTGCTTTTG
GAATATCAAGTCAGTAAAATGTTGGAACATAATAGAAAGTGCTTTATAATGAATGTCATT
TTAGAATTTTATTTTTTTCAAGATTCTACTCAACATGTCCCTTCAGAAACAAGTGAGGAC
CCCGAAGTTGAGGTGACTATTGAAGGTTAGTCATCTAAAAGCCTTGATTCCAAAAGTTTA
CTTCTGGTCATAAAACTACTTGTCACATTCCCATTGCGAAGTATGCATTTCATTCATTTT
TAAGGAAACTTGTGAGAAAAGACGGCAGCATATATGTGTGTGTGTGACCACAGCAGCCCG
CCTCCCACCCGCAGGCCCAGTGGCCCGGTGCTGGGGGCTTAGACGAGAGAGGGCGCCCCG
AGGGGGGCGGTGCGCCAGCCTTGGGAGGAGAGCGTTAAACGGAGGCTCTGACCAGGCTGC
ACGTTGCAGCCTGCTCCCGGGCTGTGACGGAAGAGACCTCTGTGCAGCCCTGACTCTCTG
GTGTCTCCTGCAGGAGCGTGGAGGAGAACGTGTCTATAGTTCAGTCACTTTCTCAAGTGA
GCTCCCCCCAGAATGCCCTCCGAGGCCAGCCTATAGCTTGTCCTTCAGAACTTCGGAAGC
AGCAGCTGCAGAAATCAGCTCATTTCCGCATATCGTTACAGTTGCTTCAAGCCTGTTTTG
TTTTTGTTTCTGTCAAAGGTAGTAAGTACTTGAATGTCGAGGAAGCAGCTTGTTCTGAAG
TATTTAAAGATTCAGCTAATACTATTACTAACAGGATCATGCTTCATACTTAAGCATTAT
TAAATATGTATTGGGTTTTTTTCCTTTTTAGTTATCTCACACTATACATTTTTTCCTTTC
AAAGTAATTCTTTTCTAAGGGAAAAATAAAAGTTTTTATTTCTACAACTACATGCTCCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               365-476, + strand, RNAz p=0.644758

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-476, + strand, RNAz p=0.644758

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               14-502, gnl|bosTau2|chr25 (28725841-28726331)
               

               
               14-502, gnl|Hg17|chr7 (73577601-73578067)
               

               
               14-502, gnl|Mm7|chr5 (133522014-133521603)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-502, gnl|bosTau2|chr25 (28725841-28726331)
               

               
               14-502, gnl|Hg17|chr7 (73577601-73578067)
               

               
               14-502, gnl|Mm7|chr5 (133522014-133521603)

	14-502, gnl\|bosTau2\|chr25 (28725841-28726331)
	14-502, gnl\|Hg17\|chr7 (73577601-73578067)
	14-502, gnl\|Mm7\|chr5 (133522014-133521603)