Non-Coding RNA Search

Ss1.1-Pig4-TMW8042H17.5

Sequence:


               
               TGATTATGGAAAAGCAAATCCAAAAATTTGGTGTCTAGGTTGAGGAATAAAGAAAATTAT
AAGAAGATATATTACCCATAGAGAAAAAAATATAGTTTCCCATTATAGTAGGGTTAGAGG
TTACATCATAAAATACTTTACTTGAGTTTTTTTGTGGTTTGCCTCAGATGATTAGTTCTG
AGAAATAGATGAGCCACTATTGAATTAGGTGGTGTTACACGAAGAAGTACACGGGGACCA
TATAGGCTTTTGCTTTGTTCTACAGGTACTAGGTGTACTTTCTCAAAGGATGTTTTGAGA
ATGTGGAATCAGATTTAAACGATAACATTATTTTAAGGTTTGAAATTGTACTAGTCTATG
AAGCTCTTCTATAAATCCCATGAACTTTTTTTTTTTATATTACAATGTATTTTTTAAAAC
AACTTGAATTTTAACAGGTCTGGCAGTCTAATTATGTTTTATCCATTCTGAGGTATGAGA
ATTGGGATATTCAGCCAATCATCATATATATATATATACCCATATATATGATATGTATAT
ATATCGCACAAAGGATATATATAACTTGCTCACTGCTATATTTCCTGTATGTAGTAAATG
ATCTCTAGCTCATAGTAAATGTTCAATAAATATTTACTGAATGAATAGTTAATTGTATAT
CTGAACTATTTTGTAATGTCTGCTATTCCGCCTTATCACTTAATATTTTGCAGAAATATA
TATTATAGTTCTGATGTATAACATAAGAAAAAGTTCAATATCTGGTAATGGGTTAAAATT
AGAAATGACCTATTTATATTCATTATGTTTTTTTCTTACAATTTCCGAAACTCAACATTT
AATATGGTAAACATCGGTTTTAAATAATTTGACTTACATTTTGCCAACAATTACATACAT
CTTTAATAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTATGGAAAAGCAAATCCAAAAATTTGGTGTCTAGGTTGAGGAATAAAGAAAATTAT
AAGAAGATATATTACCCATAGAGAAAAAAATATAGTTTCCCATTATAGTAGGGTTAGAGG
TTACATCATAAAATACTTTACTTGAGTTTTTTTGTGGTTTGCCTCAGATGATTAGTTCTG
AGAAATAGATGAGCCACTATTGAATTAGGTGGTGTTACACGAAGAAGTACACGGGGACCA
TATAGGCTTTTGCTTTGTTCTACAGGTACTAGGTGTACTTTCTCAAAGGATGTTTTGAGA
ATGTGGAATCAGATTTAAACGATAACATTATTTTAAGGTTTGAAATTGTACTAGTCTATG
AAGCTCTTCTATAAATCCCATGAACTTTTTTTTTTTATATTACAATGTATTTTTTAAAAC
AACTTGAATTTTAACAGGTCTGGCAGTCTAATTATGTTTTATCCATTCTGAGGTATGAGA
ATTGGGATATTCAGCCAATCATCATATATATATATATACCCATATATATGATATGTATAT
ATATCGCACAAAGGATATATATAACTTGCTCACTGCTATATTTCCTGTATGTAGTAAATG
ATCTCTAGCTCATAGTAAATGTTCAATAAATATTTACTGAATGAATAGTTAATTGTATAT
CTGAACTATTTTGTAATGTCTGCTATTCCGCCTTATCACTTAATATTTTGCAGAAATATA
TATTATAGTTCTGATGTATAACATAAGAAAAAGTTCAATATCTGGTAATGGGTTAAAATT
AGAAATGACCTATTTATATTCATTATGTTTTTTTCTTACAATTTCCGAAACTCAACATTT
AATATGGTAAACATCGGTTTTAAATAATTTGACTTACATTTTGCCAACAATTACATACAT
CTTTAATAAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               434-544, - strand, RNAz p=0.507908

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-544, - strand, RNAz p=0.507908

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-912, gnl|bosTau2|chr13 (11014658-11015539)
               

               
               1-912, gnl|Hg17|chr10 (21860130-21861036)
               

               
               1-912, gnl|Mm7|chr2 (18126850-18127701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr13 (11014658-11015539)
               

               
               1-912, gnl|Hg17|chr10 (21860130-21861036)
               

               
               1-912, gnl|Mm7|chr2 (18126850-18127701)

	1-912, gnl\|bosTau2\|chr13 (11014658-11015539)
	1-912, gnl\|Hg17\|chr10 (21860130-21861036)
	1-912, gnl\|Mm7\|chr2 (18126850-18127701)