Ss1.1-Pig4-TMW8042I09.5
|
GCCCCGGGAGCCCAGTTAGGTTATGGATTTGGGGAGAATGACCACAGAGGTGAAGTGCCG
TCTCATCACATCATGTGAAAGGCAAAAGCATCATCAATAAGACTTGCACGATCAGCAGTT
GAAAAGTCCTGGAAGGAGGAAGAAAAAGAGGAAATCCCATCAAAAACAGATGTTATTTCA
GCAGGAGTTGACACAGTGACTACAATTGGGTGTGAAGATATCAAAGAATCGTCCTCTTGT
ACAGGCCAAGAAAACACAAGCATCTATAAATTCTGTTTCTGCTACTTCTGTGTGACTTTT
GGACATGTGCAAGCCCTGTTTCCATATCTGTGCAATAGGAATGCTGATATCAACTCAGAG
ATTTGTCTGAGAATTAAATAAGGTAGTATGTTGATTTGCCCAAATTTTTTGGTTTCAGGG
GTCTTTTCCCATCAGCTAATCGTTAGAATTTGAATGATTCATAATTATTTGAGGGAAACA
ATAGCTTTTGCTCTAGTTCTTTTAGTTACTTTTAGTTACTGTCTCATTTCAGACCTAGTT
TTTCTCGACAAAATGGAGAGGTTGGGAGGTCTAGCCCTGTAGTAAGACTGCCTAGATTCA
AAGCTCAGTTTCTCCACTTCCTAGACATGTAAGTTAAAGTAGTTTCCCTCACTCGTTATA
TAGGAATAATGATGGCAGTGACCTTTTAGAAATGTGCAGAGGATTTAATGCAGGGCAGGC
ATTTGACATAGTACCTGGCACAGTATAAAAACGTAACACATTACTGCTATAATTATTTTG
ATCCTTAATTAGATTCTGAAATCTAGCTCTATTAAATCACTACTAATAAAAAATCAAAAG
CTTTATTGGTCTTGCTTAATCAAAAATAAATCCCCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GCCCCGGGAGCCCAGTTAGGTTATGGATTTGGGGAGAATGACCACAGAGGTGAAGTGCCG
TCTCATCACATCATGTGAAAGGCAAAAGCATCATCAATAAGACTTGCACGATCAGCAGTT
GAAAAGTCCTGGAAGGAGGAAGAAAAAGAGGAAATCCCATCAAAAACAGATGTTATTTCA
GCAGGAGTTGACACAGTGACTACAATTGGGTGTGAAGATATCAAAGAATCGTCCTCTTGT
ACAGGCCAAGAAAACACAAGCATCTATAAATTCTGTTTCTGCTACTTCTGTGTGACTTTT
GGACATGTGCAAGCCCTGTTTCCATATCTGTGCAATAGGAATGCTGATATCAACTCAGAG
ATTTGTCTGAGAATTAAATAAGGTAGTATGTTGATTTGCCCAAATTTTTTGGTTTCAGGG
GTCTTTTCCCATCAGCTAATCGTTAGAATTTGAATGATTCATAATTATTTGAGGGAAACA
ATAGCTTTTGCTCTAGTTCTTTTAGTTACTTTTAGTTACTGTCTCATTTCAGACCTAGTT
TTTCTCGACAAAATGGAGAGGTTGGGAGGTCTAGCCCTGTAGTAAGACTGCCTAGATTCA
AAGCTCAGTTTCTCCACTTCCTAGACATGTAAGTTAAAGTAGTTTCCCTCACTCGTTATA
TAGGAATAATGATGGCAGTGACCTTTTAGAAATGTGCAGAGGATTTAATGCAGGGCAGGC
ATTTGACATAGTACCTGGCACAGTATAAAAACGTAACACATTACTGCTATAATTATTTTG
ATCCTTAATTAGATTCTGAAATCTAGCTCTATTAAATCACTACTAATAAAAAATCAAAAG
CTTTATTGGTCTTGCTTAATCAAAAATAAATCCCCC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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244-866, gnl|bosTau2|chr6 (7811412-7812024) |
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244-866, gnl|canFam2|chr32 (33508781-33509433) |
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244-866, gnl|dasNov1|scaffold_1140 (61220-61884) |
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244-866, gnl|echTel1|scaffold_278943 (871-260) |
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244-866, gnl|hg17|chr4 (111791321-111791966) |
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244-866, gnl|Hg17|chr4 (111791953-111791327) |
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244-866, gnl|loxAfr1|scaffold_38773 (36332-35678) |
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244-866, gnl|mm7|chr3 (129146013-129145463) |
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244-866, gnl|Mm7|chr3 (129145466-129146005) |
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244-866, gnl|oryCun1|scaffold_204988 (55260-54690) |
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244-866, gnl|rheMac2|chr5 (103432144-103432789) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
244-866, gnl|bosTau2|chr6 (7811412-7812024) |
|
244-866, gnl|canFam2|chr32 (33508781-33509433) |
|
244-866, gnl|dasNov1|scaffold_1140 (61220-61884) |
|
244-866, gnl|echTel1|scaffold_278943 (871-260) |
|
244-866, gnl|hg17|chr4 (111791321-111791966) |
|
244-866, gnl|Hg17|chr4 (111791953-111791327) |
|
244-866, gnl|loxAfr1|scaffold_38773 (36332-35678) |
|
244-866, gnl|mm7|chr3 (129146013-129145463) |
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244-866, gnl|Mm7|chr3 (129145466-129146005) |
|
244-866, gnl|oryCun1|scaffold_204988 (55260-54690) |
|
244-866, gnl|rheMac2|chr5 (103432144-103432789) |
