Non-Coding RNA Search

Ss1.1-Pig4-TMW8042I13.5

Sequence:


               
               CATTGCAAGAGTCCTGTCATCATCACTGGCTTGTTTCCCTAAATATCTAACACACTTCTA
TGTCTGGGGTGTTATTTATAGATCTGCAAACCTTAAGAGAGAAGATAAAATCGACAGAAA
AGATGATGCTAAAAAGAGTGAAGATGGAAGTGGAGAAAAGAGTAAAGAGCAGGATGATCA
GAAACCTGGCCCTTCAGAGCGTTCTCGAACCACAAAATCAGGTAGCTGACCAGTGGGTGC
AGATTTCGCCTTGTGTTCTGTTCTTGGCTGATGATGTGCTTAGTTGACAATACAAAGTAC
ATTCATTTTCCATGGAGGTGAATGTTTTTTCTCATTTGGAAGCATTACTTCTTAACCTTA
TTCCTTTCTTCTTGTAGGAAGTCGAGGAACTGAGCGGACTGTAGTGATGGATAAATCTAA
AGGTGTGCCTGTTATTAGTGTCAAAACATCAGGATCCAAAGAGAGAGTGAGTGGTTTATT
TTCCACCAGGGCAATTAGCACTTACTTCCTTTATCCTTTATCTTTTATTTCTATTTTAAT
GTGTGTTTTAGAGGATTCTTGACCTTAATTTGAGAAGAGTTGTTAACCTTTTCAAAATGT
AGAAAATTTTTTGGCCACACCCACAGCATGTAGAAGTTCCCAGACCAGGGGTTGAACCCA
AGCCACAGCAGTGACAGCACTGGATCCTTATCTCCCTGTACCACCTGGGAACTCCAAACA
TGTAGAATTTTTTAATTGAAAAATGAGAACGTTTAAAAGCGTTCCTTCGTTAATTTGTCC
TGATAAAAAAATTGTTACTTTTTTTTTTAACTCATTTTTAAATTCTATTATGGGAGTGGT
TGGCTCTTTTTTTTCACCTGATCAGGAAACACCAGTCCATTTTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGCAAGAGTCCTGTCATCATCACTGGCTTGTTTCCCTAAATATCTAACACACTTCTA
TGTCTGGGGTGTTATTTATAGATCTGCAAACCTTAAGAGAGAAGATAAAATCGACAGAAA
AGATGATGCTAAAAAGAGTGAAGATGGAAGTGGAGAAAAGAGTAAAGAGCAGGATGATCA
GAAACCTGGCCCTTCAGAGCGTTCTCGAACCACAAAATCAGGTAGCTGACCAGTGGGTGC
AGATTTCGCCTTGTGTTCTGTTCTTGGCTGATGATGTGCTTAGTTGACAATACAAAGTAC
ATTCATTTTCCATGGAGGTGAATGTTTTTTCTCATTTGGAAGCATTACTTCTTAACCTTA
TTCCTTTCTTCTTGTAGGAAGTCGAGGAACTGAGCGGACTGTAGTGATGGATAAATCTAA
AGGTGTGCCTGTTATTAGTGTCAAAACATCAGGATCCAAAGAGAGAGTGAGTGGTTTATT
TTCCACCAGGGCAATTAGCACTTACTTCCTTTATCCTTTATCTTTTATTTCTATTTTAAT
GTGTGTTTTAGAGGATTCTTGACCTTAATTTGAGAAGAGTTGTTAACCTTTTCAAAATGT
AGAAAATTTTTTGGCCACACCCACAGCATGTAGAAGTTCCCAGACCAGGGGTTGAACCCA
AGCCACAGCAGTGACAGCACTGGATCCTTATCTCCCTGTACCACCTGGGAACTCCAAACA
TGTAGAATTTTTTAATTGAAAAATGAGAACGTTTAAAAGCGTTCCTTCGTTAATTTGTCC
TGATAAAAAAATTGTTACTTTTTTTTTTAACTCATTTTTAAATTCTATTATGGGAGTGGT
TGGCTCTTTTTTTTCACCTGATCAGGAAACACCAGTCCATTTTCATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               45-271, + strand, RNAz p=0.960683

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-271, + strand, RNAz p=0.960683

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               45-496, gnl|bosTau2|chr7 (13358704-13358255)
               

               
               45-496, gnl|Hg17|chr19 (5605065-5605496)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-496, gnl|bosTau2|chr7 (13358704-13358255)
               

               
               45-496, gnl|Hg17|chr19 (5605065-5605496)

	45-496, gnl\|bosTau2\|chr7 (13358704-13358255)
	45-496, gnl\|Hg17\|chr19 (5605065-5605496)