Non-Coding RNA Search

Ss1.1-Pig4-TMW8042I15.3

Sequence:


               
               TTGAGGGTCGTAAAAAACGGATTCGATCTAAACAAGAATGATAAAAAACAAAAGCAATAT
TGTAGAACCCGCAAGTATGGGAGGATTCCCGCCCCGGAGAGAAATCTCATAGATGCAAAA
CGCACGAACATTGGAAATTTAACAGAGTGCCTTAAAAACATCAAATTAAATGTAGGCAGT
GGTAACATGCATGTTAACAATTTCTCTTATGATAGATGGTTCAAATTAACTTCCAGGAAA
GTGCATTAACGTTGCCTTTGAAGGCTCTGGTCTGAGCTTCTGAGAACACTGCCCGTTTTT
TATTATTGTAACCTGCAAGAGGGAAACATATAAACACCCAGGACAGCAGGTAATGGGGTG
GGGGGAAACATAAACAAAGCCAGAAAGGACGCTAGTGGGCAACAGAACTGCTCAGACTGG
GTCTCTGGCCTTGCCCACTGTGAGTAGGGTTAGCTGCAGTTTTACCACCATTATTGGCGC
TATTGTTTTTAATTCCTCCATTCAGAGAACAAATAAACCATCTTAATAAATCTATCCTAG
AGCCAGGACCTCCAAAGGCCAAATTAAAACCATTCTTGAGCAGAAATGGCAAAACCCCTT
TCCCAAAGCCTTGTTCAGCAGTAAGCAGTGGTATAATCTATCAATATTTCTTGGCTTTCA
TGCGTGAAGAATCGTATTTACATTGTATTAAAATGACTCTTAAATTTGCACAATATTGTA
ATGTAGCAAATGTAGTATTAATATCGATCTGAACAGCAGATAATTTATTTAGACAAGAGC
ATCTCATTTGTATGCAGGGTGGCCTGAGCTGTGGACTTGGACTGCCCCCCTTTTACTTTC
AGTGCAAATGCAGGTCTGCTAGTGAGAGAGGGAGTTATTCTTTGCAAGAGGATAAAGTGA
AAACCTTAAAACAAATGGAAGATTTATTGAATAGCCTCCTTGGTGTTTGAATGCATTTTA
TCTTAATAAGTCTTCTTGATGGAAACGTGTTTTTCAAAAGTGACAAAGAGCCTGGGAAGC
AGCGACTGGGCTGCTTTAGCTCTGGCAGGCCTGGGGCCTGGCTGGCTCTCCACTACCCAG
CTCTTTAGCCAAATTAATCAGGAAGCAAGCCAGTGTCAGGGAAGCTGGGGTTTTAAAATC
TCATCCAGTGAGGTGTCTTGAAGCAGAAATGTGACTTGGAGCTGGACAGAGGTCTTCTCA
AGAAAAGTCTCCCTCCTTTTTCCTTGTCCCCCCTAAGGTTCTTTGAACCCCCTTGACTTT
TCTGATCTCATGCCCTTTCCCAGAGAGAGGCGAAGACTGTGCAGGCTGCAGGGAAGATTG
TGGAATTATTCATGCTTTTCTTTCAACTTTCCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGGGTCGTAAAAAACGGATTCGATCTAAACAAGAATGATAAAAAACAAAAGCAATAT
TGTAGAACCCGCAAGTATGGGAGGATTCCCGCCCCGGAGAGAAATCTCATAGATGCAAAA
CGCACGAACATTGGAAATTTAACAGAGTGCCTTAAAAACATCAAATTAAATGTAGGCAGT
GGTAACATGCATGTTAACAATTTCTCTTATGATAGATGGTTCAAATTAACTTCCAGGAAA
GTGCATTAACGTTGCCTTTGAAGGCTCTGGTCTGAGCTTCTGAGAACACTGCCCGTTTTT
TATTATTGTAACCTGCAAGAGGGAAACATATAAACACCCAGGACAGCAGGTAATGGGGTG
GGGGGAAACATAAACAAAGCCAGAAAGGACGCTAGTGGGCAACAGAACTGCTCAGACTGG
GTCTCTGGCCTTGCCCACTGTGAGTAGGGTTAGCTGCAGTTTTACCACCATTATTGGCGC
TATTGTTTTTAATTCCTCCATTCAGAGAACAAATAAACCATCTTAATAAATCTATCCTAG
AGCCAGGACCTCCAAAGGCCAAATTAAAACCATTCTTGAGCAGAAATGGCAAAACCCCTT
TCCCAAAGCCTTGTTCAGCAGTAAGCAGTGGTATAATCTATCAATATTTCTTGGCTTTCA
TGCGTGAAGAATCGTATTTACATTGTATTAAAATGACTCTTAAATTTGCACAATATTGTA
ATGTAGCAAATGTAGTATTAATATCGATCTGAACAGCAGATAATTTATTTAGACAAGAGC
ATCTCATTTGTATGCAGGGTGGCCTGAGCTGTGGACTTGGACTGCCCCCCTTTTACTTTC
AGTGCAAATGCAGGTCTGCTAGTGAGAGAGGGAGTTATTCTTTGCAAGAGGATAAAGTGA
AAACCTTAAAACAAATGGAAGATTTATTGAATAGCCTCCTTGGTGTTTGAATGCATTTTA
TCTTAATAAGTCTTCTTGATGGAAACGTGTTTTTCAAAAGTGACAAAGAGCCTGGGAAGC
AGCGACTGGGCTGCTTTAGCTCTGGCAGGCCTGGGGCCTGGCTGGCTCTCCACTACCCAG
CTCTTTAGCCAAATTAATCAGGAAGCAAGCCAGTGTCAGGGAAGCTGGGGTTTTAAAATC
TCATCCAGTGAGGTGTCTTGAAGCAGAAATGTGACTTGGAGCTGGACAGAGGTCTTCTCA
AGAAAAGTCTCCCTCCTTTTTCCTTGTCCCCCCTAAGGTTCTTTGAACCCCCTTGACTTT
TCTGATCTCATGCCCTTTCCCAGAGAGAGGCGAAGACTGTGCAGGCTGCAGGGAAGATTG
TGGAATTATTCATGCTTTTCTTTCAACTTTCCATCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               355-473, - strand, RNAz p=0.510869
               

               
               952-1111, + strand, RNAz p=0.564017

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-473, - strand, RNAz p=0.510869
               

               
               952-1111, + strand, RNAz p=0.564017

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1356, gnl|bosTau2|chr7 (58270677-58269323)
               

               
               1-1356, gnl|Hg17|chr5 (92950539-92951893)
               

               
               1-1356, gnl|Mm7|chr13 (75209308-75207946)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1356, gnl|bosTau2|chr7 (58270677-58269323)
               

               
               1-1356, gnl|Hg17|chr5 (92950539-92951893)
               

               
               1-1356, gnl|Mm7|chr13 (75209308-75207946)

	355-473, - strand, RNAz p=0.510869
	952-1111, + strand, RNAz p=0.564017

	1-1356, gnl\|bosTau2\|chr7 (58270677-58269323)
	1-1356, gnl\|Hg17\|chr5 (92950539-92951893)
	1-1356, gnl\|Mm7\|chr13 (75209308-75207946)