Ss1.1-Pig4-TMW8042J07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCCTCATCGAGGCATCTGCAATTCAAGTGACGTCAGAGGGTGCTCCTGCTTCTCAGAG TGGCAGGGACCTGGATGTTCAGTTCCTGTACCAGCTAACCAGTCATTTTGGACGCGAGAG GAATATACTAACCTAAAGCTCCCCAGAGCCTCTCACAAAGCTGTGGTCAATGGAAATATA ATGTGGATTGTTGGAGGATATATGTTCAACCACTCAGATTACAACATGGTTCTGGCGTAT GACCTTGCTTCTCGGGAGTGGCTTGCACTGAACAGTTCTGTGAACAGTGTAGTTGTTAGA TATGGGCATTCTTTAGCATTATACAAGGATAAAATCTACATGTACGGAGGAAAAATTGAT TCAACAGGGAATGTGACCAATGAGTTGAGAGTGTTTCATATTCATAACGAATCATGGGTA CTGTTGACCCCTAAAGCAAAAGAGCAGTATGCGGTGGTCGGGCACTCGGCACACATCGTC ACGTTGACAAGCGGCCGAGTGGTCATGCTGGTTATCTTTGGTCACTGCCCTCTCTATGGA TATATAAGCAATGTGCAGGAATATGACTTGGATAAGAACACGTGGAGTATATTACATACC CAGGGTGCCCTGGTCCAAGGCGGCTATGGCCACAGCAGTGTCTTTGACCACATTACCAGG GCCCTGTATGTTCATGGAGGCTACAAAGCTTTCAGCGCCAATAAATACCGACTTGCGGAT GATCTCTACAGATACAACGTGGACACCCAGATGTGGACCATTCTTAAGGACAGCCGGTTT TTCCGTTACTTGCACACAGCTGTGATAGTGAGTGGAACCATGCTGGTGTTTGGAGGAAAC ACACACAATGACACGTCCATGAGCCATGGAGCTAAATGCTTCTCTTCAGATTTCATGGCT TATGACATTGCTTGTGACCGATGGTCAGTGCTTCCCAGACCTGATCTGCACCATGATGTC AACAGATTTGGCCATTCAGCGGTCTTACACAACAGCACCATGTATGTATTTGGTGGTTTC AATAGTCTCCTCCTCAGTGACATCCTGGTATTCACCTCAGAAGAGTGTGAAGCACACCAG AGTGAAGCCGCTTGTCTAGCAGCAGGACCTGGCATCCGGTGTGTGTGGGACACAGGATCA TCTCAGTGTGTCTCCTGGGAGTTGGCGACTGAAGCACAGAGAGCAAAGTTAAACTCAGAA TGTTTTTTCAAAAGAACTCTTGACCATGACAGATGTGACCAGCACACGGATTGTTACAGC TGCACGGCCAACACTAATGACTGCCACTGGTGCAATGACCATTGTGTCCCTATGAACCAC AGCTGCACGGAAGGCCAGATCTCCATTGCCAAATATGAGAATTGCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCCTCATCGAGGCATCTGCAATTCAAGTGACGTCAGAGGGTGCTCCTGCTTCTCAGAG TGGCAGGGACCTGGATGTTCAGTTCCTGTACCAGCTAACCAGTCATTTTGGACGCGAGAG GAATATACTAACCTAAAGCTCCCCAGAGCCTCTCACAAAGCTGTGGTCAATGGAAATATA ATGTGGATTGTTGGAGGATATATGTTCAACCACTCAGATTACAACATGGTTCTGGCGTAT GACCTTGCTTCTCGGGAGTGGCTTGCACTGAACAGTTCTGTGAACAGTGTAGTTGTTAGA TATGGGCATTCTTTAGCATTATACAAGGATAAAATCTACATGTACGGAGGAAAAATTGAT TCAACAGGGAATGTGACCAATGAGTTGAGAGTGTTTCATATTCATAACGAATCATGGGTA CTGTTGACCCCTAAAGCAAAAGAGCAGTATGCGGTGGTCGGGCACTCGGCACACATCGTC ACGTTGACAAGCGGCCGAGTGGTCATGCTGGTTATCTTTGGTCACTGCCCTCTCTATGGA TATATAAGCAATGTGCAGGAATATGACTTGGATAAGAACACGTGGAGTATATTACATACC CAGGGTGCCCTGGTCCAAGGCGGCTATGGCCACAGCAGTGTCTTTGACCACATTACCAGG GCCCTGTATGTTCATGGAGGCTACAAAGCTTTCAGCGCCAATAAATACCGACTTGCGGAT GATCTCTACAGATACAACGTGGACACCCAGATGTGGACCATTCTTAAGGACAGCCGGTTT TTCCGTTACTTGCACACAGCTGTGATAGTGAGTGGAACCATGCTGGTGTTTGGAGGAAAC ACACACAATGACACGTCCATGAGCCATGGAGCTAAATGCTTCTCTTCAGATTTCATGGCT TATGACATTGCTTGTGACCGATGGTCAGTGCTTCCCAGACCTGATCTGCACCATGATGTC AACAGATTTGGCCATTCAGCGGTCTTACACAACAGCACCATGTATGTATTTGGTGGTTTC AATAGTCTCCTCCTCAGTGACATCCTGGTATTCACCTCAGAAGAGTGTGAAGCACACCAG AGTGAAGCCGCTTGTCTAGCAGCAGGACCTGGCATCCGGTGTGTGTGGGACACAGGATCA TCTCAGTGTGTCTCCTGGGAGTTGGCGACTGAAGCACAGAGAGCAAAGTTAAACTCAGAA TGTTTTTTCAAAAGAACTCTTGACCATGACAGATGTGACCAGCACACGGATTGTTACAGC TGCACGGCCAACACTAATGACTGCCACTGGTGCAATGACCATTGTGTCCCTATGAACCAC AGCTGCACGGAAGGCCAGATCTCCATTGCCAAATATGAGAATTGCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1033-1338, + strand, RNAz p=0.681776 | |
| 1250-1341, - strand, RNAz p=0.702399 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1033-1338, + strand, RNAz p=0.681776 | |
| 1250-1341, - strand, RNAz p=0.702399 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 67-239, gnl|bosTau2|chr13 (34963097-34963269) | |
| 67-239, gnl|canFam2|chr24 (20801411-20801233) | |
| 67-239, gnl|danRer3|chr13 (18143449-18143271) | |
| 67-239, gnl|dasNov1|scaffold_99998 (6883-6705) | |
| 67-239, gnl|echTel1|scaffold_228892 (6369-6547) | |
| 67-239, gnl|fr1|chrUn (114314889-114314706) | |
| 67-239, gnl|galGal2|chr4 (89266800-89266978) | |
| 67-239, gnl|hg17|chr20 (3477814-3477992) | |
| 67-239, gnl|Hg17|chr20 (3477816-3477988) | |
| 67-239, gnl|loxAfr1|scaffold_4428 (28416-28594) | |
| 67-239, gnl|mm7|chr2 (130688409-130688587) | |
| 67-239, gnl|Mm7|chr2 (130688411-130688583) | |
| 67-239, gnl|monDom2|scaffold_10 (47617469-47617656) | |
| 67-239, gnl|oryCun1|scaffold_138304 (4771-4955) | |
| 67-239, gnl|panTro1|chr21 (3456010-3456188) | |
| 67-239, gnl|rheMac2|chr10 (36869171-36869349) | |
| 67-239, gnl|rn3|chr3 (118519600-118519778) | |
| 67-239, gnl|tetNig1|chr10 (12105174-12104995) | |
| 67-239, gnl|xenTro1|scaffold_990 (253580-253758) | |
| 326-574, gnl|bosTau2|chr13 (33538918-33539166) | |
| 326-574, gnl|canFam2|chr24 (20788821-20788588) | |
| 326-574, gnl|danRer3|chr13 (18139672-18139426) | |
| 326-574, gnl|dasNov1|scaffold_13887 (4566-4346) | |
| 326-574, gnl|echTel1|scaffold_196659 (11742-11510) | |
| 326-574, gnl|fr1|chrUn (198417110-198417352) | |
| 326-574, gnl|galGal2|chr4 (89269279-89269511) | |
| 326-574, gnl|hg17|chr20 (3489299-3489532) | |
| 326-574, gnl|Hg17|chr20 (3489307-3489555) | |
| 326-574, gnl|mm7|chr2 (130698748-130698981) | |
| 326-574, gnl|Mm7|chr2 (130698756-130699004) | |
| 326-574, gnl|monDom2|scaffold_10 (47624521-47624754) | |
| 326-574, gnl|panTro1|chr21 (3467144-3467377) | |
| 326-574, gnl|rheMac2|chr10 (36880235-36880468) | |
| 326-574, gnl|rn3|chr3 (118530256-118530489) | |
| 326-574, gnl|tetNig1|chr10 (12103554-12103321) | |
| 326-574, gnl|xenTro1|scaffold_990 (255381-255618) | |
| 755-910, gnl|bosTau2|chr13 (33540929-33541084) | |
| 755-910, gnl|canFam2|chr24 (20785495-20785314) | |
| 755-910, gnl|danRer3|chr13 (18126309-18126132) | |
| 755-910, gnl|dasNov1|scaffold_13887 (2659-2523) | |
| 755-910, gnl|echTel1|scaffold_196659 (8794-8613) | |
| 755-910, gnl|fr1|chrUn (198417972-198418142) | |
| 755-910, gnl|galGal2|chr4 (89272413-89272577) | |
| 755-910, gnl|hg17|chr20 (3491854-3492035) | |
| 755-910, gnl|Hg17|chr20 (3491855-3492010) | |
| 755-910, gnl|loxAfr1|scaffold_4428 (37388-37570) | |
| 755-910, gnl|mm7|chr2 (130702371-130702552) | |
| 755-910, gnl|Mm7|chr2 (130702372-130702527) | |
| 755-910, gnl|monDom2|scaffold_10 (47632201-47632382) | |
| 755-910, gnl|oryCun1|scaffold_108181 (18348-18529) | |
| 755-910, gnl|panTro1|chr21 (3469699-3469880) | |
| 755-910, gnl|rheMac2|chr10 (36882797-36882978) | |
| 755-910, gnl|rn3|chr3 (118534060-118534241) | |
| 755-910, gnl|tetNig1|chr10 (12102758-12102597) | |
| 755-910, gnl|xenTro1|scaffold_990 (257915-258078) | |
| 994-1216, gnl|bosTau2|chr13 (33547455-33547674) | |
| 994-1216, gnl|Hg17|chr20 (3501376-3501598) | |
| 994-1216, gnl|Mm7|chr2 (130710856-130711078) | |
| 1220-1341, gnl|bosTau2|chr13 (33549944-33550065) | |
| 1220-1341, gnl|canFam2|chr24 (20773359-20773211) | |
| 1220-1341, gnl|danRer3|chr13 (18115337-18115222) | |
| 1220-1341, gnl|echTel1|scaffold_196659 (2962-2812) | |
| 1220-1341, gnl|fr1|chrUn (198423078-198423227) | |
| 1220-1341, gnl|galGal2|chr4 (89281116-89281247) | |
| 1220-1341, gnl|hg17|chr20 (3504469-3504617) | |
| 1220-1341, gnl|Hg17|chr20 (3504477-3504598) | |
| 1220-1341, gnl|loxAfr1|scaffold_4428 (46689-46839) | |
| 1220-1341, gnl|mm7|chr2 (130713073-130713221) | |
| 1220-1341, gnl|Mm7|chr2 (130713081-130713202) | |
| 1220-1341, gnl|monDom2|scaffold_10 (47643013-47643171) | |
| 1220-1341, gnl|oryCun1|scaffold_190076 (13256-13108) | |
| 1220-1341, gnl|panTro1|chr21 (3482472-3482620) | |
| 1220-1341, gnl|rheMac2|chr10 (36895666-36895814) | |
| 1220-1341, gnl|rn3|chr3 (118544588-118544736) | |
| 1220-1341, gnl|tetNig1|chr10 (12098373-12098256) | |
| 1220-1341, gnl|xenTro1|scaffold_990 (260676-260808) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-239, gnl|bosTau2|chr13 (34963097-34963269) | |
| 67-239, gnl|canFam2|chr24 (20801411-20801233) | |
| 67-239, gnl|danRer3|chr13 (18143449-18143271) | |
| 67-239, gnl|dasNov1|scaffold_99998 (6883-6705) | |
| 67-239, gnl|echTel1|scaffold_228892 (6369-6547) | |
| 67-239, gnl|fr1|chrUn (114314889-114314706) | |
| 67-239, gnl|galGal2|chr4 (89266800-89266978) | |
| 67-239, gnl|hg17|chr20 (3477814-3477992) | |
| 67-239, gnl|Hg17|chr20 (3477816-3477988) | |
| 67-239, gnl|loxAfr1|scaffold_4428 (28416-28594) | |
| 67-239, gnl|mm7|chr2 (130688409-130688587) | |
| 67-239, gnl|Mm7|chr2 (130688411-130688583) | |
| 67-239, gnl|monDom2|scaffold_10 (47617469-47617656) | |
| 67-239, gnl|oryCun1|scaffold_138304 (4771-4955) | |
| 67-239, gnl|panTro1|chr21 (3456010-3456188) | |
| 67-239, gnl|rheMac2|chr10 (36869171-36869349) | |
| 67-239, gnl|rn3|chr3 (118519600-118519778) | |
| 67-239, gnl|tetNig1|chr10 (12105174-12104995) | |
| 67-239, gnl|xenTro1|scaffold_990 (253580-253758) | |
| 326-574, gnl|bosTau2|chr13 (33538918-33539166) | |
| 326-574, gnl|canFam2|chr24 (20788821-20788588) | |
| 326-574, gnl|danRer3|chr13 (18139672-18139426) | |
| 326-574, gnl|dasNov1|scaffold_13887 (4566-4346) | |
| 326-574, gnl|echTel1|scaffold_196659 (11742-11510) | |
| 326-574, gnl|fr1|chrUn (198417110-198417352) | |
| 326-574, gnl|galGal2|chr4 (89269279-89269511) | |
| 326-574, gnl|hg17|chr20 (3489299-3489532) | |
| 326-574, gnl|Hg17|chr20 (3489307-3489555) | |
| 326-574, gnl|mm7|chr2 (130698748-130698981) | |
| 326-574, gnl|Mm7|chr2 (130698756-130699004) | |
| 326-574, gnl|monDom2|scaffold_10 (47624521-47624754) | |
| 326-574, gnl|panTro1|chr21 (3467144-3467377) | |
| 326-574, gnl|rheMac2|chr10 (36880235-36880468) | |
| 326-574, gnl|rn3|chr3 (118530256-118530489) | |
| 326-574, gnl|tetNig1|chr10 (12103554-12103321) | |
| 326-574, gnl|xenTro1|scaffold_990 (255381-255618) | |
| 755-910, gnl|bosTau2|chr13 (33540929-33541084) | |
| 755-910, gnl|canFam2|chr24 (20785495-20785314) | |
| 755-910, gnl|danRer3|chr13 (18126309-18126132) | |
| 755-910, gnl|dasNov1|scaffold_13887 (2659-2523) | |
| 755-910, gnl|echTel1|scaffold_196659 (8794-8613) | |
| 755-910, gnl|fr1|chrUn (198417972-198418142) | |
| 755-910, gnl|galGal2|chr4 (89272413-89272577) | |
| 755-910, gnl|hg17|chr20 (3491854-3492035) | |
| 755-910, gnl|Hg17|chr20 (3491855-3492010) | |
| 755-910, gnl|loxAfr1|scaffold_4428 (37388-37570) | |
| 755-910, gnl|mm7|chr2 (130702371-130702552) | |
| 755-910, gnl|Mm7|chr2 (130702372-130702527) | |
| 755-910, gnl|monDom2|scaffold_10 (47632201-47632382) | |
| 755-910, gnl|oryCun1|scaffold_108181 (18348-18529) | |
| 755-910, gnl|panTro1|chr21 (3469699-3469880) | |
| 755-910, gnl|rheMac2|chr10 (36882797-36882978) | |
| 755-910, gnl|rn3|chr3 (118534060-118534241) | |
| 755-910, gnl|tetNig1|chr10 (12102758-12102597) | |
| 755-910, gnl|xenTro1|scaffold_990 (257915-258078) | |
| 994-1216, gnl|bosTau2|chr13 (33547455-33547674) | |
| 994-1216, gnl|Hg17|chr20 (3501376-3501598) | |
| 994-1216, gnl|Mm7|chr2 (130710856-130711078) | |
| 1220-1341, gnl|bosTau2|chr13 (33549944-33550065) | |
| 1220-1341, gnl|canFam2|chr24 (20773359-20773211) | |
| 1220-1341, gnl|danRer3|chr13 (18115337-18115222) | |
| 1220-1341, gnl|echTel1|scaffold_196659 (2962-2812) | |
| 1220-1341, gnl|fr1|chrUn (198423078-198423227) | |
| 1220-1341, gnl|galGal2|chr4 (89281116-89281247) | |
| 1220-1341, gnl|hg17|chr20 (3504469-3504617) | |
| 1220-1341, gnl|Hg17|chr20 (3504477-3504598) | |
| 1220-1341, gnl|loxAfr1|scaffold_4428 (46689-46839) | |
| 1220-1341, gnl|mm7|chr2 (130713073-130713221) | |
| 1220-1341, gnl|Mm7|chr2 (130713081-130713202) | |
| 1220-1341, gnl|monDom2|scaffold_10 (47643013-47643171) | |
| 1220-1341, gnl|oryCun1|scaffold_190076 (13256-13108) | |
| 1220-1341, gnl|panTro1|chr21 (3482472-3482620) | |
| 1220-1341, gnl|rheMac2|chr10 (36895666-36895814) | |
| 1220-1341, gnl|rn3|chr3 (118544588-118544736) | |
| 1220-1341, gnl|tetNig1|chr10 (12098373-12098256) | |
| 1220-1341, gnl|xenTro1|scaffold_990 (260676-260808) |