Non-Coding RNA Search

Ss1.1-Pig4-TMW8042K03.5

Sequence:


               
               CGCGGCGCCCTCTCTCGTCCATCTTTGTGCGTCTCGCGCCGCCGCCGCCGCCGCCCGCCC
GCCGCGTGAGAGGACGGGATCCGCGCGCTCCGCGGAACGCAGTCAGGTTCCCTCCCCTCG
GAAGAGTCACGAAGGAGAAGCCGTCGCCGCCGAAAAGGAGCCGCCGGTGCCGGTCCCCGG
GGGCGCCATGGCGACTGGAGCGAACGCCACGCCGCTGGACTTCCCAAGTAAGAAACGGAA
GAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTAC
AGTTATCCCCCCTGGACTTACTCGGGAACAAGAAAGAGCTTATATAGTGCAACTGCAGAT
AGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGA
CAGGTTGGGAAACAGTTTTAACCAGCTGACAGTAACGCTTTTACCTTTTTCTCAATACGT
TTTACTGGTGGCAACATGTTGTGTCAGTTCAATACAATCCTAGTAAGAAGACTGGTACTC
TGACCATTTTGGGTACTAGACTGTAAATAGCAGTATGTATGGTCAGTTATCAGTTAGTAA
ATTGGAATGAAATTCAATTACTAGCAGAATCAAAGTTACAGGAAAATGGACAACGGGTTT
TCAATTGGTAAGCCTGTAGATTTTAACCTGATTTACCTATGGATAGGGACAGAGAGGTGG
CCTGTTAACCAGCCTTTTCAGTACCTGCTTTGGATGAAGGCCCAGGGTGTAGTTTTCCTT
ACAGGTACTACACAATGCAGGGATTAAGAATATTTTTGAGCATCGCTGAGTCTGAGCAGG
CCGGAAACTCAGTCTGGTCAGCTTGTTGATGTAGTCTCCTGCTCATGGTTTTGACATGGT
TTTAAAAATAGATGAGATTCTAACCAACTTCCTTCACTGCCAGTTAATTTTCAGCCTTGA
TCATTGCCTGGGGTGTTGGGAGGGGCCAGAATATTCTCACTTGTTGGGGAAGGCAAGCAA
ACAGCTCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCGCCCTCTCTCGTCCATCTTTGTGCGTCTCGCGCCGCCGCCGCCGCCGCCCGCCC
GCCGCGTGAGAGGACGGGATCCGCGCGCTCCGCGGAACGCAGTCAGGTTCCCTCCCCTCG
GAAGAGTCACGAAGGAGAAGCCGTCGCCGCCGAAAAGGAGCCGCCGGTGCCGGTCCCCGG
GGGCGCCATGGCGACTGGAGCGAACGCCACGCCGCTGGACTTCCCAAGTAAGAAACGGAA
GAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTAC
AGTTATCCCCCCTGGACTTACTCGGGAACAAGAAAGAGCTTATATAGTGCAACTGCAGAT
AGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGA
CAGGTTGGGAAACAGTTTTAACCAGCTGACAGTAACGCTTTTACCTTTTTCTCAATACGT
TTTACTGGTGGCAACATGTTGTGTCAGTTCAATACAATCCTAGTAAGAAGACTGGTACTC
TGACCATTTTGGGTACTAGACTGTAAATAGCAGTATGTATGGTCAGTTATCAGTTAGTAA
ATTGGAATGAAATTCAATTACTAGCAGAATCAAAGTTACAGGAAAATGGACAACGGGTTT
TCAATTGGTAAGCCTGTAGATTTTAACCTGATTTACCTATGGATAGGGACAGAGAGGTGG
CCTGTTAACCAGCCTTTTCAGTACCTGCTTTGGATGAAGGCCCAGGGTGTAGTTTTCCTT
ACAGGTACTACACAATGCAGGGATTAAGAATATTTTTGAGCATCGCTGAGTCTGAGCAGG
CCGGAAACTCAGTCTGGTCAGCTTGTTGATGTAGTCTCCTGCTCATGGTTTTGACATGGT
TTTAAAAATAGATGAGATTCTAACCAACTTCCTTCACTGCCAGTTAATTTTCAGCCTTGA
TCATTGCCTGGGGTGTTGGGAGGGGCCAGAATATTCTCACTTGTTGGGGAAGGCAAGCAA
ACAGCTCTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7513390|pir||I68668

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7513390|pir||I68668

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               811-927, + strand, RNAz p=0.957263

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               811-927, + strand, RNAz p=0.957263

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-218, gnl|bosTau2|chr29 (33927759-33927554)
               

               
               1-218, gnl|Hg17|chr11 (64302616-64302410)
               

               
               1-218, gnl|Mm7|chr19 (6258702-6258924)
               


               
               346-1023, gnl|bosTau2|chr29 (33923092-33922423)
               

               
               346-1023, gnl|Hg17|chr11 (64297555-64296875)
               

               
               346-1023, gnl|Mm7|chr19 (6263168-6263780)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr29 (33927759-33927554)
               

               
               1-218, gnl|Hg17|chr11 (64302616-64302410)
               

               
               1-218, gnl|Mm7|chr19 (6258702-6258924)
               


               
               346-1023, gnl|bosTau2|chr29 (33923092-33922423)
               

               
               346-1023, gnl|Hg17|chr11 (64297555-64296875)
               

               
               346-1023, gnl|Mm7|chr19 (6263168-6263780)

	1-218, gnl\|bosTau2\|chr29 (33927759-33927554)
	1-218, gnl\|Hg17\|chr11 (64302616-64302410)
	1-218, gnl\|Mm7\|chr19 (6258702-6258924)

	346-1023, gnl\|bosTau2\|chr29 (33923092-33922423)
	346-1023, gnl\|Hg17\|chr11 (64297555-64296875)
	346-1023, gnl\|Mm7\|chr19 (6263168-6263780)