Ss1.1-Pig4-TMW8042K12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAAATTTGAAGCAAGCTGGGACGCTGAGGCACGGCCACTAAGCTGGACCCTTCGCGGG TTCCTTGGCTACCTGGGCCACTTGAGACCAGTCATGCCTATTCGTGCTCTGTGCACTATA TGCTCCGACTTCTTCGATCACTCCCGCGACGTGGCAGCCATCCACTGCGGCCACACCTTC CACTTGCAGTGCCTAATTCAGTGGTTCGAGACAGCACCAAGTCGGACCTGCCCACAGTGC CGAATCCAGGTTGGCAAAAGAACCATTATCAATAAGCTCTTCTTTGACCTTGCCCAGGAG GAGGAGAGTGTCTTAGATGCAGAATTCCTAAAGAATGAACTGGATAATACCAGAGCCCTG CTTTCCCAGAAAGAGAAGGAAAAACGAGACAGCCAGATCATCATTGACACTTTGCGGGAC ACGCTGGAAGAGCGCAACGCCACTGTGGAATCCCTGCAGAAGGCCTTAGACAAGGCCGAA ATGCTGTGCTCCACCCTCAAGAAGCAGATGAAGTACTTGGAGCAGCAGCAGGATGAGACC AAACAAGCACGGGAGGAAGCCCGCCGACTCCGGAGCAAGATGAAGACTATGGAGCGGATT GAGCTCCTACTCCAGAGCCAGCGGCCTGAGGTGGAGGAAATGATCCGAGAAATGGGTGTG GGACAATCAGCAGTGGAGCAGCTGGCTGTGTACTGCGTGTCCCTCAAGAAAGAGTACGAG AATCTAAAAGAGGCACGGAAGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAAATTTGAAGCAAGCTGGGACGCTGAGGCACGGCCACTAAGCTGGACCCTTCGCGGG TTCCTTGGCTACCTGGGCCACTTGAGACCAGTCATGCCTATTCGTGCTCTGTGCACTATA TGCTCCGACTTCTTCGATCACTCCCGCGACGTGGCAGCCATCCACTGCGGCCACACCTTC CACTTGCAGTGCCTAATTCAGTGGTTCGAGACAGCACCAAGTCGGACCTGCCCACAGTGC CGAATCCAGGTTGGCAAAAGAACCATTATCAATAAGCTCTTCTTTGACCTTGCCCAGGAG GAGGAGAGTGTCTTAGATGCAGAATTCCTAAAGAATGAACTGGATAATACCAGAGCCCTG CTTTCCCAGAAAGAGAAGGAAAAACGAGACAGCCAGATCATCATTGACACTTTGCGGGAC ACGCTGGAAGAGCGCAACGCCACTGTGGAATCCCTGCAGAAGGCCTTAGACAAGGCCGAA ATGCTGTGCTCCACCCTCAAGAAGCAGATGAAGTACTTGGAGCAGCAGCAGGATGAGACC AAACAAGCACGGGAGGAAGCCCGCCGACTCCGGAGCAAGATGAAGACTATGGAGCGGATT GAGCTCCTACTCCAGAGCCAGCGGCCTGAGGTGGAGGAAATGATCCGAGAAATGGGTGTG GGACAATCAGCAGTGGAGCAGCTGGCTGTGTACTGCGTGTCCCTCAAGAAAGAGTACGAG AATCTAAAAGAGGCACGGAAGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 598-710, + strand, RNAz p=0.682396 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 598-710, + strand, RNAz p=0.682396 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-191, gnl|bosTau2|chr22 (38178595-38178402) | |
| 1-191, gnl|Hg17|chr3 (49868986-49868793) | |
| 1-191, gnl|Mm7|chr9 (107682637-107682830) | |
| 372-501, gnl|bosTau2|chr22 (38169214-38169085) | |
| 372-501, gnl|canFam2|chr20 (42440542-42440407) | |
| 372-501, gnl|echTel1|scaffold_309710 (81098-80963) | |
| 372-501, gnl|galGal2|chr12 (2253730-2253865) | |
| 372-501, gnl|hg17|chr3 (49856236-49856371) | |
| 372-501, gnl|Hg17|chr3 (49856367-49856238) | |
| 372-501, gnl|loxAfr1|scaffold_15371 (53469-53334) | |
| 372-501, gnl|mm7|chr9 (107691228-107691093) | |
| 372-501, gnl|Mm7|chr9 (107691095-107691224) | |
| 372-501, gnl|monDom2|scaffold_5 (74858230-74858095) | |
| 372-501, gnl|oryCun1|scaffold_191234 (61952-62087) | |
| 372-501, gnl|panTro1|chr2_random (38993122-38993257) | |
| 372-501, gnl|rheMac2|chr2 (86562206-86562071) | |
| 372-501, gnl|rn3|chr8 (113248451-113248316) | |
| 598-710, gnl|bosTau2|chr22 (38167375-38167263) | |
| 598-710, gnl|canFam2|chr20 (42442459-42442324) | |
| 598-710, gnl|dasNov1|scaffold_143619 (1056-1191) | |
| 598-710, gnl|echTel1|scaffold_309710 (83321-83184) | |
| 598-710, gnl|fr1|chrUn (4230070-4230197) | |
| 598-710, gnl|galGal2|chr12 (2250616-2250751) | |
| 598-710, gnl|hg17|chr3 (49854247-49854382) | |
| 598-710, gnl|Hg17|chr3 (49854375-49854263) | |
| 598-710, gnl|loxAfr1|scaffold_15371 (55633-55498) | |
| 598-710, gnl|mm7|chr9 (107693323-107693196) | |
| 598-710, gnl|Mm7|chr9 (107693201-107693313) | |
| 598-710, gnl|monDom2|scaffold_5 (74866879-74866743) | |
| 598-710, gnl|oryCun1|scaffold_191234 (59994-60129) | |
| 598-710, gnl|panTro1|chr2_random (39054542-39054407) | |
| 598-710, gnl|rheMac2|chr2 (86564173-86564038) | |
| 598-710, gnl|rn3|chr8 (113250694-113250567) | |
| 598-710, gnl|tetNig1|chr11 (9333554-9333669) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-191, gnl|bosTau2|chr22 (38178595-38178402) | |
| 1-191, gnl|Hg17|chr3 (49868986-49868793) | |
| 1-191, gnl|Mm7|chr9 (107682637-107682830) | |
| 372-501, gnl|bosTau2|chr22 (38169214-38169085) | |
| 372-501, gnl|canFam2|chr20 (42440542-42440407) | |
| 372-501, gnl|echTel1|scaffold_309710 (81098-80963) | |
| 372-501, gnl|galGal2|chr12 (2253730-2253865) | |
| 372-501, gnl|hg17|chr3 (49856236-49856371) | |
| 372-501, gnl|Hg17|chr3 (49856367-49856238) | |
| 372-501, gnl|loxAfr1|scaffold_15371 (53469-53334) | |
| 372-501, gnl|mm7|chr9 (107691228-107691093) | |
| 372-501, gnl|Mm7|chr9 (107691095-107691224) | |
| 372-501, gnl|monDom2|scaffold_5 (74858230-74858095) | |
| 372-501, gnl|oryCun1|scaffold_191234 (61952-62087) | |
| 372-501, gnl|panTro1|chr2_random (38993122-38993257) | |
| 372-501, gnl|rheMac2|chr2 (86562206-86562071) | |
| 372-501, gnl|rn3|chr8 (113248451-113248316) | |
| 598-710, gnl|bosTau2|chr22 (38167375-38167263) | |
| 598-710, gnl|canFam2|chr20 (42442459-42442324) | |
| 598-710, gnl|dasNov1|scaffold_143619 (1056-1191) | |
| 598-710, gnl|echTel1|scaffold_309710 (83321-83184) | |
| 598-710, gnl|fr1|chrUn (4230070-4230197) | |
| 598-710, gnl|galGal2|chr12 (2250616-2250751) | |
| 598-710, gnl|hg17|chr3 (49854247-49854382) | |
| 598-710, gnl|Hg17|chr3 (49854375-49854263) | |
| 598-710, gnl|loxAfr1|scaffold_15371 (55633-55498) | |
| 598-710, gnl|mm7|chr9 (107693323-107693196) | |
| 598-710, gnl|Mm7|chr9 (107693201-107693313) | |
| 598-710, gnl|monDom2|scaffold_5 (74866879-74866743) | |
| 598-710, gnl|oryCun1|scaffold_191234 (59994-60129) | |
| 598-710, gnl|panTro1|chr2_random (39054542-39054407) | |
| 598-710, gnl|rheMac2|chr2 (86564173-86564038) | |
| 598-710, gnl|rn3|chr8 (113250694-113250567) | |
| 598-710, gnl|tetNig1|chr11 (9333554-9333669) |