Non-Coding RNA Search

Ss1.1-Pig4-TMW8042M22.3

Sequence:


               
               TCAAATGGAACCTTAGGGTATTTGAGGTTCTTTGAGGGAGCATGGTATGCACCAGTTTCC
GAAGGCACTTTGGTGTTTATGTATGTGAAGTAAGCCGTAAATAAAAATTCCTTCTCGTAT
TTCTGTAGTATGATGATGATCTGCATTATTAAGGGCAGGAGTCTTTAAAAGTTTTTCTCT
TTGCAGTTCAACTGTTTCTTTACTTCAACCAACCATGACAAGATGCTCATTCAGAATACT
TGCCAATTTCAAAGCAACGAAGAGAACCTGACTGGATTTGATCAAAATAAAGTAATTCCA
ACAGAACAATAGTAGATAAATTAGAGGTCCTACTCTCAGTTTTATCAAAACAGTGCTGCA
TCTGAATTTACCCAAGGCCATGGGAAATAAGGAACAGTGACACTAAAACAAAGAAAAATC
TTGTTGCAAATTAGACACAGCGAATTTTGCTTTCTGATTGGGAATACCTGTAAGAAAAAT
AAATATTTCTGAATCTTTATAGGTGTATTTGATCCTTTCCTTATGTCTCTCCATATAATC
AAGTTCTTTTGGAAAGTAAAGCTGATGTATTTTTTAAAAAAATACCATAGTTAGGATAGA
ATTAAGAAATTCTCCTTTTTTTTCTTTAATCATTGTCTTAATTCACATGTCTCATTTAAG
ATTTAAGCCTACAGGTCTTAGCCTATATAAAATTCAGAATATGTAATAGACAATTCAGTT
GAATGCCAGGTATTGTATTTATAATTTAAATTTAAAAACTGTGAATGTACTTTTACCTTG
CCTTAAAGTTAGAGCTCTGAAATACATTTTCTCATAGAACTCTGAATTTTATTTAACTCT
AGATATTTATACAAAGGAAGTATTTAAAAAAAATTGGAAGAATGTGCAATGGGTGAAGAC
AGGGGAGAGTAGGAAGAAAAAGCCCAGGTTCAAATTGGTTACATACTGAATATTTAAATT
GATTTATATTGAACATTTCCTCCATTTTAAGTGAAAGAAGCTTCCATTTTCAAGTTCTAT
ACCCCCCTTTTCCCTACCAGGGCCTCCTTTAATTATAGGGGAGAGTCTTTAAGCCCCCCT
CCTCCCCATCTCCCCTCCCATTCTTTTCAGCCCCTCCCCCAACCATTCTCTACAGCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAATGGAACCTTAGGGTATTTGAGGTTCTTTGAGGGAGCATGGTATGCACCAGTTTCC
GAAGGCACTTTGGTGTTTATGTATGTGAAGTAAGCCGTAAATAAAAATTCCTTCTCGTAT
TTCTGTAGTATGATGATGATCTGCATTATTAAGGGCAGGAGTCTTTAAAAGTTTTTCTCT
TTGCAGTTCAACTGTTTCTTTACTTCAACCAACCATGACAAGATGCTCATTCAGAATACT
TGCCAATTTCAAAGCAACGAAGAGAACCTGACTGGATTTGATCAAAATAAAGTAATTCCA
ACAGAACAATAGTAGATAAATTAGAGGTCCTACTCTCAGTTTTATCAAAACAGTGCTGCA
TCTGAATTTACCCAAGGCCATGGGAAATAAGGAACAGTGACACTAAAACAAAGAAAAATC
TTGTTGCAAATTAGACACAGCGAATTTTGCTTTCTGATTGGGAATACCTGTAAGAAAAAT
AAATATTTCTGAATCTTTATAGGTGTATTTGATCCTTTCCTTATGTCTCTCCATATAATC
AAGTTCTTTTGGAAAGTAAAGCTGATGTATTTTTTAAAAAAATACCATAGTTAGGATAGA
ATTAAGAAATTCTCCTTTTTTTTCTTTAATCATTGTCTTAATTCACATGTCTCATTTAAG
ATTTAAGCCTACAGGTCTTAGCCTATATAAAATTCAGAATATGTAATAGACAATTCAGTT
GAATGCCAGGTATTGTATTTATAATTTAAATTTAAAAACTGTGAATGTACTTTTACCTTG
CCTTAAAGTTAGAGCTCTGAAATACATTTTCTCATAGAACTCTGAATTTTATTTAACTCT
AGATATTTATACAAAGGAAGTATTTAAAAAAAATTGGAAGAATGTGCAATGGGTGAAGAC
AGGGGAGAGTAGGAAGAAAAAGCCCAGGTTCAAATTGGTTACATACTGAATATTTAAATT
GATTTATATTGAACATTTCCTCCATTTTAAGTGAAAGAAGCTTCCATTTTCAAGTTCTAT
ACCCCCCTTTTCCCTACCAGGGCCTCCTTTAATTATAGGGGAGAGTCTTTAAGCCCCCCT
CCTCCCCATCTCCCCTCCCATTCTTTTCAGCCCCTCCCCCAACCATTCTCTACAGCCCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               190-304, - strand, RNAz p=0.867483

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-304, - strand, RNAz p=0.867483

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-161, gnl|bosTau2|chr5 (5016406-5016248)
               

               
               2-161, gnl|Hg17|chr12 (78156617-78156447)
               


               
               190-1013, gnl|bosTau2|chr5 (5016185-5015373)
               

               
               190-1013, gnl|Hg17|chr12 (78156385-78155274)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-161, gnl|bosTau2|chr5 (5016406-5016248)
               

               
               2-161, gnl|Hg17|chr12 (78156617-78156447)
               


               
               190-1013, gnl|bosTau2|chr5 (5016185-5015373)
               

               
               190-1013, gnl|Hg17|chr12 (78156385-78155274)

	2-161, gnl\|bosTau2\|chr5 (5016406-5016248)
	2-161, gnl\|Hg17\|chr12 (78156617-78156447)

	190-1013, gnl\|bosTau2\|chr5 (5016185-5015373)
	190-1013, gnl\|Hg17\|chr12 (78156385-78155274)