Non-Coding RNA Search

Ss1.1-Pig4-TMW8042N05.5

Sequence:


               
               AAGTAAGAAAAGTTCGGAGATCTTTGAGAGACATCCACATTTCTTTTCAACCCTTATATC
TTCTAAAAGTATTGTCTTGGCTTAGAGCTGCCCTGGAAGACCTGATCCCACAGTCTGGGA
AGGAAGTGGATGGATTCATTTAGGAAAAATGAATAGAGTAACCTGCCATCATGATGCTCT
CCCAGGTCCTCTGGGAAGCCGTGCCGTGTGGTTGAAGCATGGGCTTGAGACTGAGGTAAA
GAGGCCACCAAGGTGCGGTTTCAAGCTCTGGCCAAATGCGAGGTTTGGGGACTCCCATTA
CCCTTTTTGTAAAGCGAATTGCCTGGTAAAGGTGAGAGCAGAATGGCAGGGTTCCCACAC
AGACCTAGCACCCTCTCCCTCTGAAGCCCATCCTCTGAACCACTCTGCCCTAATGCCTCT
GGGTTTCCTTTACCTTTGAGGCCAGGGGATCAGCCCCACGATTTCCGAGTTCCCTGCTAG
CTCCAGAAGTCCAGGGGAGGTGATCACTGAGCCTATCCCCTGTTCCCATGTGAGGGCGCG
GCCTTCAGTGCTGTGGTGTTATAAGAAGGAGCTGGGGTTTAGCAGTCATCGGAAGAAAAG
AATGCGACAGCTGCAGAAAAAAATAAAGAACGGGACGCTGAACATCAAGCAAGATGACCC
CTTTGAACTCTTCGTAGCCGCCACAAACATTCGCTACTGCTACTACAACGAGACCCACAA
GATCCTGGGCAATACTTTTGGCATGTGTGTTCTGCAGGATTTTGAAGCTCTGACTCCCAA
CTTGCTGGCCAGGACTGTGGAGACCGTGGAAGGCGGTGGGCTGGTGGTTATCCTCCTCCG
GACCATGAATTCACTCAAGCAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTAAGAAAAGTTCGGAGATCTTTGAGAGACATCCACATTTCTTTTCAACCCTTATATC
TTCTAAAAGTATTGTCTTGGCTTAGAGCTGCCCTGGAAGACCTGATCCCACAGTCTGGGA
AGGAAGTGGATGGATTCATTTAGGAAAAATGAATAGAGTAACCTGCCATCATGATGCTCT
CCCAGGTCCTCTGGGAAGCCGTGCCGTGTGGTTGAAGCATGGGCTTGAGACTGAGGTAAA
GAGGCCACCAAGGTGCGGTTTCAAGCTCTGGCCAAATGCGAGGTTTGGGGACTCCCATTA
CCCTTTTTGTAAAGCGAATTGCCTGGTAAAGGTGAGAGCAGAATGGCAGGGTTCCCACAC
AGACCTAGCACCCTCTCCCTCTGAAGCCCATCCTCTGAACCACTCTGCCCTAATGCCTCT
GGGTTTCCTTTACCTTTGAGGCCAGGGGATCAGCCCCACGATTTCCGAGTTCCCTGCTAG
CTCCAGAAGTCCAGGGGAGGTGATCACTGAGCCTATCCCCTGTTCCCATGTGAGGGCGCG
GCCTTCAGTGCTGTGGTGTTATAAGAAGGAGCTGGGGTTTAGCAGTCATCGGAAGAAAAG
AATGCGACAGCTGCAGAAAAAAATAAAGAACGGGACGCTGAACATCAAGCAAGATGACCC
CTTTGAACTCTTCGTAGCCGCCACAAACATTCGCTACTGCTACTACAACGAGACCCACAA
GATCCTGGGCAATACTTTTGGCATGTGTGTTCTGCAGGATTTTGAAGCTCTGACTCCCAA
CTTGCTGGCCAGGACTGTGGAGACCGTGGAAGGCGGTGGGCTGGTGGTTATCCTCCTCCG
GACCATGAATTCACTCAAGCAGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               165-277, + strand, RNAz p=0.593704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-277, + strand, RNAz p=0.593704

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-758, gnl|bosTau2|chr15 (39053621-39054357)
               

               
               6-758, gnl|Hg17|chr11 (34089615-34090347)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-758, gnl|bosTau2|chr15 (39053621-39054357)
               

               
               6-758, gnl|Hg17|chr11 (34089615-34090347)

	6-758, gnl\|bosTau2\|chr15 (39053621-39054357)
	6-758, gnl\|Hg17\|chr11 (34089615-34090347)