Non-Coding RNA Search

Ss1.1-Pig4-TMW8042P10.3

Sequence:


               
               GTTTCCCAATCACTTCTCCCGAAACTCTTACCGCCAGAAAGATAGAAAGGACTTATCTTT
CTCATCTTCGTATTTTATTTTATTTCTTTTTTCTTT------------------------
------------------------------------------------------------
------------------------------------------------------------
CACAGCAGGAACTCCTATATCTGTACTTTAATAGCACACTTTGTCATAAATAATAGGGAG
TACATAGTTCAAAAAAAACCAACACAAAGTAGAAGATGTTAAGGGAGAGACAGGTTTTGG
AAAGGCAGAGACTCCGGCAGGGGCGGGAGAAGATCACAGATGGGCTCATGAGGAAGAAAG
CAGACAGAGCTTGAGTGATGGGTACGGAGAGGGGCAGTGGAGGAGGTCGTGCAGGAGGAG
TGGAGTAACACAAATAAGCCTAGGGGAAGGAATCTGTGGACTGTTATGGGGGAGCAGCTT
TTAGTTCATTTATCTGGAGGGTAGGATGCATTAAGGGGCAGTACAGGGAATAAGCGTTCA
TTTCTGATGCTGGATCTGCTTTACTAAGATAGAGTTGGAGCCAAAGGAAGCACTTTAGGC
TCTGATGGTACAACATCTCCAGTCTCAATTAATTATCTGCCCCACCTCACAGGGTCAAAT
GAAATGTTTGAGAAAGTGCTTTGTGAGCTCCGAAGCACTGGAAATGTAAGATGGTATTTC
TGATGTTGTATTAATGTGATTGAACTTTTTATCTCACAGTACTGTTCTCTATGAGAGATT
TTTTTCCCTAAGGAGCTCTGAGCACCGGACTATTGCATGTCCCTTGATAACCACCCTGAC
ATGCCTCCCAGCCCTTAGCTGGTGTGGGCTGCACTGGGCATCTGGCATCGAGAGTGAGAA
GTCACACGTGCACTGGGACCCAGCTGTGCGGGAGAAGCTCTGTGTCTTTCTTCTGTAATG
ACTACAGACTAGGGCCTGGCTGGTTTAAAAACAATCGCAACAACATTTTATTTTTATTTT
TTGTTTTTGCATGTTCATCTTTATTAGAAATGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCCCAATCACTTCTCCCGAAACTCTTACCGCCAGAAAGATAGAAAGGACTTATCTTT
CTCATCTTCGTATTTTATTTTATTTCTTTTTTCTTT------------------------
------------------------------------------------------------
------------------------------------------------------------
CACAGCAGGAACTCCTATATCTGTACTTTAATAGCACACTTTGTCATAAATAATAGGGAG
TACATAGTTCAAAAAAAACCAACACAAAGTAGAAGATGTTAAGGGAGAGACAGGTTTTGG
AAAGGCAGAGACTCCGGCAGGGGCGGGAGAAGATCACAGATGGGCTCATGAGGAAGAAAG
CAGACAGAGCTTGAGTGATGGGTACGGAGAGGGGCAGTGGAGGAGGTCGTGCAGGAGGAG
TGGAGTAACACAAATAAGCCTAGGGGAAGGAATCTGTGGACTGTTATGGGGGAGCAGCTT
TTAGTTCATTTATCTGGAGGGTAGGATGCATTAAGGGGCAGTACAGGGAATAAGCGTTCA
TTTCTGATGCTGGATCTGCTTTACTAAGATAGAGTTGGAGCCAAAGGAAGCACTTTAGGC
TCTGATGGTACAACATCTCCAGTCTCAATTAATTATCTGCCCCACCTCACAGGGTCAAAT
GAAATGTTTGAGAAAGTGCTTTGTGAGCTCCGAAGCACTGGAAATGTAAGATGGTATTTC
TGATGTTGTATTAATGTGATTGAACTTTTTATCTCACAGTACTGTTCTCTATGAGAGATT
TTTTTCCCTAAGGAGCTCTGAGCACCGGACTATTGCATGTCCCTTGATAACCACCCTGAC
ATGCCTCCCAGCCCTTAGCTGGTGTGGGCTGCACTGGGCATCTGGCATCGAGAGTGAGAA
GTCACACGTGCACTGGGACCCAGCTGTGCGGGAGAAGCTCTGTGTCTTTCTTCTGTAATG
ACTACAGACTAGGGCCTGGCTGGTTTAAAAACAATCGCAACAACATTTTATTTTTATTTT
TTGTTTTTGCATGTTCATCTTTATTAGAAATGCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               572-758, - strand, RNAz p=0.990508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               572-758, - strand, RNAz p=0.990508

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               111-390, gnl|bosTau2|chr14 (7759028-7758744)
               

               
               111-390, gnl|Hg17|chr8 (124515694-124516285)
               


               
               412-926, gnl|bosTau2|chr14 (7758747-7758227)
               

               
               412-926, gnl|Hg17|chr8 (124516278-124516786)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-390, gnl|bosTau2|chr14 (7759028-7758744)
               

               
               111-390, gnl|Hg17|chr8 (124515694-124516285)
               


               
               412-926, gnl|bosTau2|chr14 (7758747-7758227)
               

               
               412-926, gnl|Hg17|chr8 (124516278-124516786)

	111-390, gnl\|bosTau2\|chr14 (7759028-7758744)
	111-390, gnl\|Hg17\|chr8 (124515694-124516285)

	412-926, gnl\|bosTau2\|chr14 (7758747-7758227)
	412-926, gnl\|Hg17\|chr8 (124516278-124516786)