Ss1.1-Pig4-TMW8042P16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGCCTTTGGAGAACATGGGTCACAGGGCACCTATTCAGATACCAAAGAGAATGGGAT CAACGGAGAACTGACTTCAGCTGACAGAGAAACACCAGAGGAGGTGTCTGCAAGGATAGT TCAAGTAGTCACCGCGGAGGCTGTAGCAGTCCTGAAAGGTGAACAGGAGAAAGAAGCTCA GCATAAAGACCAACCTGCAGCTCTGCCTTTAGCAGCTGAAGAGACAGCTAACCTGCCTCC TTCTCCACCCCCATCACCAGCCTCGGAACAGACGGTCCCAGTGGAGGAAGCAGCAGCTGG TGAATCAGCTCAGGCTCCCAGCGTATTTAAACAGGCAAAGGACAAAGTCTCTGATGGAGT AACCAAGAGCCCAGAAAAGCGCTCTTCTCTGCCGAGACCGTCCTCCATTCTCCCTCCTCG CCGAGGTGTGTCAGGAGACAGAGATGAGAATTCCTTCTCTCTCAACAGTTCTATCTCCTC TTCAGCACGGCGGACCACGAGGTCAGAGCCAATTCGCAGAGCAGGAAAAAGTGGCACTTC AACACCCACTACTCCTGGCTCCACCGCCATTACTCCTGGCACCCCACCAAGCTATTCTTC ACGCACACCAGGCACTCCTGGAACCCCTAGCTACCCCAGGACCCCACATACACCAGGAAC CCCCAAGTCTGCCATCTTGGTGCCCAGTGAGAAGAAAGTGGCCATTATTCGTACACCTCC AAAATCTCCTGCTACTCCCAAGCAGCTTCGGCTTATTAACCAACCACTGCCAGACCTGAA GAATGTCAAATCCAAAATCGGTTCAACAGACAACATCAAATATCAGCCTAAAGGGGGACA GGTACAGATCGTTACCAAGAAGATAGACCTAAGCCACGTGACATCCAAATGCGGCTCTCT GAAGAACATCCGCCACAGGCCAGGTGGTGGGCGAGTGAAAATTGAGAGTGTGAAACTGGA TTTCAAAGAAAAGGCCCAAGCTAAAGTCGGTTCGCTTGACAACGCTCACCACGTCCCTGG AGGTGGTAACGTCAAGATCGACAGCCAGAAGTTGAACTTCAGAGAGCATGCGAAGGCCCG TGTGGACCATGGGGCTGAGATCATTACACAGTCCCCGGGCAGGTCCAGCGTGGCATCGCC ACGACGACTCAGCAATGTCTCCTCTTCCGGAAGCATCAACCTGCTTGAGTCCCCTCAGCT CGCCACTTTGGCTGAGGATGTCACTGCCGCACTCGCTAAGCAGGGCTTGTGAATATCTCC CATTTAGCCTTGAAGTATACTATTTAGGCATGAGCTCTTGGCAGGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGCCTTTGGAGAACATGGGTCACAGGGCACCTATTCAGATACCAAAGAGAATGGGAT CAACGGAGAACTGACTTCAGCTGACAGAGAAACACCAGAGGAGGTGTCTGCAAGGATAGT TCAAGTAGTCACCGCGGAGGCTGTAGCAGTCCTGAAAGGTGAACAGGAGAAAGAAGCTCA GCATAAAGACCAACCTGCAGCTCTGCCTTTAGCAGCTGAAGAGACAGCTAACCTGCCTCC TTCTCCACCCCCATCACCAGCCTCGGAACAGACGGTCCCAGTGGAGGAAGCAGCAGCTGG TGAATCAGCTCAGGCTCCCAGCGTATTTAAACAGGCAAAGGACAAAGTCTCTGATGGAGT AACCAAGAGCCCAGAAAAGCGCTCTTCTCTGCCGAGACCGTCCTCCATTCTCCCTCCTCG CCGAGGTGTGTCAGGAGACAGAGATGAGAATTCCTTCTCTCTCAACAGTTCTATCTCCTC TTCAGCACGGCGGACCACGAGGTCAGAGCCAATTCGCAGAGCAGGAAAAAGTGGCACTTC AACACCCACTACTCCTGGCTCCACCGCCATTACTCCTGGCACCCCACCAAGCTATTCTTC ACGCACACCAGGCACTCCTGGAACCCCTAGCTACCCCAGGACCCCACATACACCAGGAAC CCCCAAGTCTGCCATCTTGGTGCCCAGTGAGAAGAAAGTGGCCATTATTCGTACACCTCC AAAATCTCCTGCTACTCCCAAGCAGCTTCGGCTTATTAACCAACCACTGCCAGACCTGAA GAATGTCAAATCCAAAATCGGTTCAACAGACAACATCAAATATCAGCCTAAAGGGGGACA GGTACAGATCGTTACCAAGAAGATAGACCTAAGCCACGTGACATCCAAATGCGGCTCTCT GAAGAACATCCGCCACAGGCCAGGTGGTGGGCGAGTGAAAATTGAGAGTGTGAAACTGGA TTTCAAAGAAAAGGCCCAAGCTAAAGTCGGTTCGCTTGACAACGCTCACCACGTCCCTGG AGGTGGTAACGTCAAGATCGACAGCCAGAAGTTGAACTTCAGAGAGCATGCGAAGGCCCG TGTGGACCATGGGGCTGAGATCATTACACAGTCCCCGGGCAGGTCCAGCGTGGCATCGCC ACGACGACTCAGCAATGTCTCCTCTTCCGGAAGCATCAACCTGCTTGAGTCCCCTCAGCT CGCCACTTTGGCTGAGGATGTCACTGCCGCACTCGCTAAGCAGGGCTTGTGAATATCTCC CATTTAGCCTTGAAGTATACTATTTAGGCATGAGCTCTTGGCAGGAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 381-1233, - strand, RNAz p=0.877042 | |
| 580-844, - strand, RNAz p=0.934348 | |
| 1114-1233, - strand, RNAz p=0.97409 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 381-1233, - strand, RNAz p=0.877042 | |
| 580-844, - strand, RNAz p=0.934348 | |
| 1114-1233, - strand, RNAz p=0.97409 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 96-212, gnl|bosTau2|chr2 (54307973-54307857) | |
| 96-212, gnl|Hg17|chr2 (210368799-210368915) | |
| 96-212, gnl|Mm7|chr1 (66639094-66639210) | |
| 353-498, gnl|bosTau2|chr2 (54282009-54281867) | |
| 353-498, gnl|canFam2|chr37 (20584107-20584263) | |
| 353-498, gnl|danRer3|chrUn (98803649-98803492) | |
| 353-498, gnl|galGal2|chr7 (2484179-2484341) | |
| 353-498, gnl|hg17|chr2 (210395809-210395965) | |
| 353-498, gnl|Hg17|chr2 (210395810-210395955) | |
| 353-498, gnl|loxAfr1|scaffold_306 (121706-121862) | |
| 353-498, gnl|mm7|chr1 (66661353-66661505) | |
| 353-498, gnl|Mm7|chr1 (66661354-66661496) | |
| 353-498, gnl|monDom2|scaffold_39 (13114891-13114735) | |
| 353-498, gnl|oryCun1|scaffold_200173 (38986-38833) | |
| 353-498, gnl|panTro1|chr13_random (27352716-27352872) | |
| 353-498, gnl|rheMac2|chr12 (73494146-73494302) | |
| 353-498, gnl|rn3|chr9 (65387919-65388071) | |
| 353-498, gnl|xenTro1|scaffold_1447 (27476-27323) | |
| 501-844, gnl|bosTau2|chr2 (54276646-54276303) | |
| 501-844, gnl|Hg17|chr2 (210400144-210400487) | |
| 501-844, gnl|Mm7|chr1 (66664905-66665239) | |
| 1035-1252, gnl|bosTau2|chr19 (41944814-41944597) | |
| 1035-1252, gnl|canFam2|chr9 (12650648-12650502) | |
| 1035-1252, gnl|danRer3|chr3 (15274867-15275013) | |
| 1035-1252, gnl|echTel1|scaffold_309860 (5397-5251) | |
| 1035-1252, gnl|fr1|chrUn (184782555-184782427) | |
| 1035-1252, gnl|galGal2|chrUn (10364-10218) | |
| 1035-1252, gnl|hg17|chr17 (41457165-41457311) | |
| 1035-1252, gnl|Hg17|chr17 (41457165-41457382) | |
| 1035-1252, gnl|loxAfr1|scaffold_132807 (5000-5146) | |
| 1035-1252, gnl|mm7|chr11 (104437011-104437157) | |
| 1035-1252, gnl|Mm7|chr11 (104437011-104437228) | |
| 1035-1252, gnl|monDom2|scaffold_18 (39203459-39203313) | |
| 1035-1252, gnl|oryCun1|scaffold_135881 (4680-4826) | |
| 1035-1252, gnl|panTro1|chr19 (44831915-44832061) | |
| 1035-1252, gnl|rheMac2|chr16 (56649811-56649957) | |
| 1035-1252, gnl|rn3|chr10 (93519000-93519146) | |
| 1035-1252, gnl|tetNig1|chr2 (1672603-1672731) | |
| 1035-1252, gnl|xenTro1|scaffold_221 (1448562-1448416) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-212, gnl|bosTau2|chr2 (54307973-54307857) | |
| 96-212, gnl|Hg17|chr2 (210368799-210368915) | |
| 96-212, gnl|Mm7|chr1 (66639094-66639210) | |
| 353-498, gnl|bosTau2|chr2 (54282009-54281867) | |
| 353-498, gnl|canFam2|chr37 (20584107-20584263) | |
| 353-498, gnl|danRer3|chrUn (98803649-98803492) | |
| 353-498, gnl|galGal2|chr7 (2484179-2484341) | |
| 353-498, gnl|hg17|chr2 (210395809-210395965) | |
| 353-498, gnl|Hg17|chr2 (210395810-210395955) | |
| 353-498, gnl|loxAfr1|scaffold_306 (121706-121862) | |
| 353-498, gnl|mm7|chr1 (66661353-66661505) | |
| 353-498, gnl|Mm7|chr1 (66661354-66661496) | |
| 353-498, gnl|monDom2|scaffold_39 (13114891-13114735) | |
| 353-498, gnl|oryCun1|scaffold_200173 (38986-38833) | |
| 353-498, gnl|panTro1|chr13_random (27352716-27352872) | |
| 353-498, gnl|rheMac2|chr12 (73494146-73494302) | |
| 353-498, gnl|rn3|chr9 (65387919-65388071) | |
| 353-498, gnl|xenTro1|scaffold_1447 (27476-27323) | |
| 501-844, gnl|bosTau2|chr2 (54276646-54276303) | |
| 501-844, gnl|Hg17|chr2 (210400144-210400487) | |
| 501-844, gnl|Mm7|chr1 (66664905-66665239) | |
| 1035-1252, gnl|bosTau2|chr19 (41944814-41944597) | |
| 1035-1252, gnl|canFam2|chr9 (12650648-12650502) | |
| 1035-1252, gnl|danRer3|chr3 (15274867-15275013) | |
| 1035-1252, gnl|echTel1|scaffold_309860 (5397-5251) | |
| 1035-1252, gnl|fr1|chrUn (184782555-184782427) | |
| 1035-1252, gnl|galGal2|chrUn (10364-10218) | |
| 1035-1252, gnl|hg17|chr17 (41457165-41457311) | |
| 1035-1252, gnl|Hg17|chr17 (41457165-41457382) | |
| 1035-1252, gnl|loxAfr1|scaffold_132807 (5000-5146) | |
| 1035-1252, gnl|mm7|chr11 (104437011-104437157) | |
| 1035-1252, gnl|Mm7|chr11 (104437011-104437228) | |
| 1035-1252, gnl|monDom2|scaffold_18 (39203459-39203313) | |
| 1035-1252, gnl|oryCun1|scaffold_135881 (4680-4826) | |
| 1035-1252, gnl|panTro1|chr19 (44831915-44832061) | |
| 1035-1252, gnl|rheMac2|chr16 (56649811-56649957) | |
| 1035-1252, gnl|rn3|chr10 (93519000-93519146) | |
| 1035-1252, gnl|tetNig1|chr2 (1672603-1672731) | |
| 1035-1252, gnl|xenTro1|scaffold_221 (1448562-1448416) |