Non-Coding RNA Search

Ss1.1-Pig4-TMW8043A08.3

Sequence:


               
               TGATGCTTCCAAACTGCAGTGACCTAAATCAGATATGTAGTCTCTCTGAACATTTCTAGA
AACAGTACATCACTGTTCTTACCCTACATAATTCTGAAGGATGTATGACCAAATAAACAC
ATAAAAATGAGGCATGGGTGTAGAGCGCTTCCCCAGCACACTTGTAGTCAACTGAGGACC
TCTAGTGCTTTTTAAAATGTATTCCACCTTCAGGTCTTTTTTTTTTAAAAAAAAAAAAAA
AAAAAAAGGACCAACTCACATTGTGGGGAGGGAAAGGGATATTTAACTGGCACTCATTGT
CCTTAAAATTTCCCCTATACTTCTTCCCCAGATGCTTTTCCTCCCAAAGAAGAATCTGAA
GTCTCAACTACTAAAATGCTAAAAAGAATATTTTAATTGCAAGTAAATTTATTTTAACAT
GATAAACAGATAATGAAAGCAAGCCTACAACAAAATAGCAACAGCAATGTGCCAATTTCA
AAGAGAAATCTCTAAGCTGCTCTTTAATGAATTTCCTTAAAGGCAGAGCTTTAAACTGAG
GGAAATATTTCATTACGGGATCAATTAAGGGGTTAAAAATATGTTGACTTCTATGTTTAC
ACAATTCTCTTCACAACCAGGCAGAAGCAGCCTGAAGATTCTTTCATATAGCCAGTGTGG
ACCAACAAAGCTTTGGAATGTTGCTGTCACAAAATATCTTCCAATATAACTTCCAAGTTT
AGCTAGCATTAGGTAATCTCAAAAGGAAAACGATGCTACCAAAGTGAAGTTTTGGATACT
AGCAGACTGATGACAAATCTACTGTCCTGACCTAATTCAACAAATCCCACCCCCCACCGC
AGCGACCAAAAAGATGCATACATAATCGCTTCTGGATTATCTGCAAAAAATAACAGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGCTTCCAAACTGCAGTGACCTAAATCAGATATGTAGTCTCTCTGAACATTTCTAGA
AACAGTACATCACTGTTCTTACCCTACATAATTCTGAAGGATGTATGACCAAATAAACAC
ATAAAAATGAGGCATGGGTGTAGAGCGCTTCCCCAGCACACTTGTAGTCAACTGAGGACC
TCTAGTGCTTTTTAAAATGTATTCCACCTTCAGGTCTTTTTTTTTTAAAAAAAAAAAAAA
AAAAAAAGGACCAACTCACATTGTGGGGAGGGAAAGGGATATTTAACTGGCACTCATTGT
CCTTAAAATTTCCCCTATACTTCTTCCCCAGATGCTTTTCCTCCCAAAGAAGAATCTGAA
GTCTCAACTACTAAAATGCTAAAAAGAATATTTTAATTGCAAGTAAATTTATTTTAACAT
GATAAACAGATAATGAAAGCAAGCCTACAACAAAATAGCAACAGCAATGTGCCAATTTCA
AAGAGAAATCTCTAAGCTGCTCTTTAATGAATTTCCTTAAAGGCAGAGCTTTAAACTGAG
GGAAATATTTCATTACGGGATCAATTAAGGGGTTAAAAATATGTTGACTTCTATGTTTAC
ACAATTCTCTTCACAACCAGGCAGAAGCAGCCTGAAGATTCTTTCATATAGCCAGTGTGG
ACCAACAAAGCTTTGGAATGTTGCTGTCACAAAATATCTTCCAATATAACTTCCAAGTTT
AGCTAGCATTAGGTAATCTCAAAAGGAAAACGATGCTACCAAAGTGAAGTTTTGGATACT
AGCAGACTGATGACAAATCTACTGTCCTGACCTAATTCAACAAATCCCACCCCCCACCGC
AGCGACCAAAAAGATGCATACATAATCGCTTCTGGATTATCTGCAAAAAATAACAGCAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               117-235, - strand, RNAz p=0.514824
               

               
               458-565, - strand, RNAz p=0.697368

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-235, - strand, RNAz p=0.514824
               

               
               458-565, - strand, RNAz p=0.697368

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               187-299, + strand, RNAmicro p=0.927908

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               187-299, + strand, RNAmicro p=0.927908

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-728, gnl|bosTau2|chr9 (16241926-16242611)
               

               
               1-728, gnl|Hg17|chr6 (118978998-118979696)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-728, gnl|bosTau2|chr9 (16241926-16242611)
               

               
               1-728, gnl|Hg17|chr6 (118978998-118979696)

	117-235, - strand, RNAz p=0.514824
	458-565, - strand, RNAz p=0.697368

	1-728, gnl\|bosTau2\|chr9 (16241926-16242611)
	1-728, gnl\|Hg17\|chr6 (118978998-118979696)