Non-Coding RNA Search

Ss1.1-Pig4-TMW8043B10.5

Sequence:


               
               TATGCAAGCTTGTTCTCAAGATAAAGCCAAAGTGTCCTTGGGTTCCAGCACAGATTCAGT
CAGTGAGGGGCCTCTTCTTAGTGAGGGGAGTCTCTCTGAAGAAGAAGGAGGCAGAGATGG
ACGGTCCCCTTTGAAGTTAGCAGAAATCTTAAAAGAAAAGGAATTCTGTGCTGAAGAAAG
AAATGCTTATGAACCCATCAAAGAGTTTCAGAAGGAAGCTGAAAAATTTTTGCCACTCTT
TGGGCACATAGGTGGTACACAAAGCAAAGGACCATGGGAAGAATTGGCAAAGGGAAGTCC
ACATAGTGTCATTAATATTTTTACAAAATCGTATAAGTTATATGGAAAAGGATTTGAAGA
CAGGTTGGAAAGAGGAACATCAGTATCGCGGCCTTTGAACACCATCACAACCCCTCTAAG
CAGCGTTTCATATGAAGATGATTTTGTCTCCTCTGCAGGGAGTGGGACTTTGACAGAAAA
AAAGTCAGCTCTTGAACCCAATGTTGGTAGTAACAGTTTAGGTATTCAGGAGGACCATTC
TAGCAGAAAGTCTGCCTGTGATCTTTCCTCTGTGGATGTTACCTCCCAGCACTCATCAGG
GGCCCAGTCTTCTGCATCATCTCGTTCATCTTCTTCTAAAGGAAAGAAAGGAAAAAAGGA
AAAGATGGAATGGCTAGATTCACTCACTGGAAATATTCAGAACTCACTTGATGAAGAAAA
AGTACCCTCTGGTTCAGAACGTGGCTCTCATCAAGGAAAGAAATCTGGGACCAGTAACAA
ACTTTCTGTTAAAGATTATGAGCAGACTCTTGACACTGATAGCACTTTGGAGGATCTTTC
TGGGCATTCTTTGAGCGTCTCATCAGACAAGGGAAGATCTCAGAAAACTCCAACTTCTCC
CCTGTCTCCAAGTTCTCAGAAATTGTTGCAGTTTGACCTTCCAGGAACTTCATTAGAAAG
ATCTAAATCTACAGTAATAATGACTCCACCTATAACAGGATTTAAGCCTAATGCAACTTT
TGCTGATGTGAACCCGGCTGCCAGCAGAACTGCAGCAGAAATGACTTCAATACCAGGTTC
CAAGCGTTTTTCCCCTGCTGGCCTCCAGCATCGTATGGCAGCAGAACTGAATTATTTGAG
TGCCATTGAGGAGTCAGTGCGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGCAAGCTTGTTCTCAAGATAAAGCCAAAGTGTCCTTGGGTTCCAGCACAGATTCAGT
CAGTGAGGGGCCTCTTCTTAGTGAGGGGAGTCTCTCTGAAGAAGAAGGAGGCAGAGATGG
ACGGTCCCCTTTGAAGTTAGCAGAAATCTTAAAAGAAAAGGAATTCTGTGCTGAAGAAAG
AAATGCTTATGAACCCATCAAAGAGTTTCAGAAGGAAGCTGAAAAATTTTTGCCACTCTT
TGGGCACATAGGTGGTACACAAAGCAAAGGACCATGGGAAGAATTGGCAAAGGGAAGTCC
ACATAGTGTCATTAATATTTTTACAAAATCGTATAAGTTATATGGAAAAGGATTTGAAGA
CAGGTTGGAAAGAGGAACATCAGTATCGCGGCCTTTGAACACCATCACAACCCCTCTAAG
CAGCGTTTCATATGAAGATGATTTTGTCTCCTCTGCAGGGAGTGGGACTTTGACAGAAAA
AAAGTCAGCTCTTGAACCCAATGTTGGTAGTAACAGTTTAGGTATTCAGGAGGACCATTC
TAGCAGAAAGTCTGCCTGTGATCTTTCCTCTGTGGATGTTACCTCCCAGCACTCATCAGG
GGCCCAGTCTTCTGCATCATCTCGTTCATCTTCTTCTAAAGGAAAGAAAGGAAAAAAGGA
AAAGATGGAATGGCTAGATTCACTCACTGGAAATATTCAGAACTCACTTGATGAAGAAAA
AGTACCCTCTGGTTCAGAACGTGGCTCTCATCAAGGAAAGAAATCTGGGACCAGTAACAA
ACTTTCTGTTAAAGATTATGAGCAGACTCTTGACACTGATAGCACTTTGGAGGATCTTTC
TGGGCATTCTTTGAGCGTCTCATCAGACAAGGGAAGATCTCAGAAAACTCCAACTTCTCC
CCTGTCTCCAAGTTCTCAGAAATTGTTGCAGTTTGACCTTCCAGGAACTTCATTAGAAAG
ATCTAAATCTACAGTAATAATGACTCCACCTATAACAGGATTTAAGCCTAATGCAACTTT
TGCTGATGTGAACCCGGCTGCCAGCAGAACTGCAGCAGAAATGACTTCAATACCAGGTTC
CAAGCGTTTTTCCCCTGCTGGCCTCCAGCATCGTATGGCAGCAGAACTGAATTATTTGAG
TGCCATTGAGGAGTCAGTGCGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61851535|ref|XP_606716.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61851535|ref|XP_606716.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, + strand, RNAz p=0.769566

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, + strand, RNAz p=0.769566

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-351, gnl|bosTau2|chr16 (46093859-46094209)
               

               
               1-351, gnl|Hg17|chr1 (176721452-176721802)
               

               
               1-351, gnl|Mm7|chr1 (155890353-155890003)
               


               
               499-672, gnl|bosTau2|chr16 (46098441-46098614)
               

               
               499-672, gnl|canFam2|chr7 (16546776-16547073)
               

               
               499-672, gnl|dasNov1|scaffold_9117 (37291-36990)
               

               
               499-672, gnl|echTel1|scaffold_323171 (60753-60458)
               

               
               499-672, gnl|galGal2|chr8 (6047392-6047115)
               

               
               499-672, gnl|hg17|chr1 (176725185-176725476)
               

               
               499-672, gnl|Hg17|chr1 (176725208-176725375)
               

               
               499-672, gnl|mm7|chr1 (155886656-155886357)
               

               
               499-672, gnl|Mm7|chr1 (155886631-155886455)
               

               
               499-672, gnl|monDom2|scaffold_16 (32876444-32876726)
               

               
               499-672, gnl|panTro1|chr1 (159092526-159092817)
               

               
               499-672, gnl|rheMac2|chr1 (190707466-190707178)
               

               
               499-672, gnl|rn3|chr13 (70950568-70950274)
               


               
               835-1077, gnl|bosTau2|chr16 (45940176-45940413)
               

               
               835-1077, gnl|Hg17|chr1 (176734631-176734875)
               

               
               835-1077, gnl|Mm7|chr1 (155877563-155877339)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-351, gnl|bosTau2|chr16 (46093859-46094209)
               

               
               1-351, gnl|Hg17|chr1 (176721452-176721802)
               

               
               1-351, gnl|Mm7|chr1 (155890353-155890003)
               


               
               499-672, gnl|bosTau2|chr16 (46098441-46098614)
               

               
               499-672, gnl|canFam2|chr7 (16546776-16547073)
               

               
               499-672, gnl|dasNov1|scaffold_9117 (37291-36990)
               

               
               499-672, gnl|echTel1|scaffold_323171 (60753-60458)
               

               
               499-672, gnl|galGal2|chr8 (6047392-6047115)
               

               
               499-672, gnl|hg17|chr1 (176725185-176725476)
               

               
               499-672, gnl|Hg17|chr1 (176725208-176725375)
               

               
               499-672, gnl|mm7|chr1 (155886656-155886357)
               

               
               499-672, gnl|Mm7|chr1 (155886631-155886455)
               

               
               499-672, gnl|monDom2|scaffold_16 (32876444-32876726)
               

               
               499-672, gnl|panTro1|chr1 (159092526-159092817)
               

               
               499-672, gnl|rheMac2|chr1 (190707466-190707178)
               

               
               499-672, gnl|rn3|chr13 (70950568-70950274)
               


               
               835-1077, gnl|bosTau2|chr16 (45940176-45940413)
               

               
               835-1077, gnl|Hg17|chr1 (176734631-176734875)
               

               
               835-1077, gnl|Mm7|chr1 (155877563-155877339)

	1-351, gnl\|bosTau2\|chr16 (46093859-46094209)
	1-351, gnl\|Hg17\|chr1 (176721452-176721802)
	1-351, gnl\|Mm7\|chr1 (155890353-155890003)

	499-672, gnl\|bosTau2\|chr16 (46098441-46098614)
	499-672, gnl\|canFam2\|chr7 (16546776-16547073)
	499-672, gnl\|dasNov1\|scaffold_9117 (37291-36990)
	499-672, gnl\|echTel1\|scaffold_323171 (60753-60458)
	499-672, gnl\|galGal2\|chr8 (6047392-6047115)
	499-672, gnl\|hg17\|chr1 (176725185-176725476)
	499-672, gnl\|Hg17\|chr1 (176725208-176725375)
	499-672, gnl\|mm7\|chr1 (155886656-155886357)
	499-672, gnl\|Mm7\|chr1 (155886631-155886455)
	499-672, gnl\|monDom2\|scaffold_16 (32876444-32876726)
	499-672, gnl\|panTro1\|chr1 (159092526-159092817)
	499-672, gnl\|rheMac2\|chr1 (190707466-190707178)
	499-672, gnl\|rn3\|chr13 (70950568-70950274)

	835-1077, gnl\|bosTau2\|chr16 (45940176-45940413)
	835-1077, gnl\|Hg17\|chr1 (176734631-176734875)
	835-1077, gnl\|Mm7\|chr1 (155877563-155877339)