Non-Coding RNA Search

Ss1.1-Pig4-TMW8043C19.3

Sequence:


               
               CACGAGTCTGCCTGCTGGAGCGACACGCTGCAGCGCTGGTTCTTCCTGCCGCGCCGGGCC
AGCCACGAGCGCTACAGCGAGAGGGACGACGAGCGCAGGGGCACCAACCTGCTGCTGAGC
GCCACCCAGGACTTCAGCGACATCTCCGTCCGCCACGTCGGGGAGGTGGTGCCCACACAC
GGCTTCTCCTCCTTCAAGTTCATCCCCAACACTGACGACCAGATCATCGTGGCCCTCAAG
TCTGAGGAGGACAGAGGCCAGATCGCCACCTACATCATGGCCTTCACGCTCGACGGGCGC
TTCCTCCTGCCCGAGACTAAGATCGGGAGTGTGAAGTACGAGGGCATAGAGTTCGTCTGA
CCCCAGGAAAACCGAGCTGGTGAGCGAGGCCCAGGGCTGGCCCGTCTAAGCTACATCAGG
ACTCAGAGTTTAAAACCTGAGGACACCACTTTTACGTGGTGTTTAGTTGAGGCTTTAGTT
TCTCGATTTGGAACCCTGAGGTGTGTGCCTGGTTCAGAGCTTTCTGGAGTCGGGAGCTTA
GTCCCCGCTGAGCTGTGGATGCTCCGAAGGGCAGGGGCCAGGGTCCTGGGCCGGCAGCCG
GACGCTTCCCTGCGCTGCCATCTGGTGGTAGAAGTTGGTCATTGCCGGCATCTTGGTTCA
AGGCCTGTCCTGATGCCACCCTTTCCTCCAGCTGACCTCCCTTTTTTTCTTTCCATTTGG
TCTTTTGTTGAATAAATATTTTTTAAGCCTCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGAGTCTGCCTGCTGGAGCGACACGCTGCAGCGCTGGTTCTTCCTGCCGCGCCGGGCC
AGCCACGAGCGCTACAGCGAGAGGGACGACGAGCGCAGGGGCACCAACCTGCTGCTGAGC
GCCACCCAGGACTTCAGCGACATCTCCGTCCGCCACGTCGGGGAGGTGGTGCCCACACAC
GGCTTCTCCTCCTTCAAGTTCATCCCCAACACTGACGACCAGATCATCGTGGCCCTCAAG
TCTGAGGAGGACAGAGGCCAGATCGCCACCTACATCATGGCCTTCACGCTCGACGGGCGC
TTCCTCCTGCCCGAGACTAAGATCGGGAGTGTGAAGTACGAGGGCATAGAGTTCGTCTGA
CCCCAGGAAAACCGAGCTGGTGAGCGAGGCCCAGGGCTGGCCCGTCTAAGCTACATCAGG
ACTCAGAGTTTAAAACCTGAGGACACCACTTTTACGTGGTGTTTAGTTGAGGCTTTAGTT
TCTCGATTTGGAACCCTGAGGTGTGTGCCTGGTTCAGAGCTTTCTGGAGTCGGGAGCTTA
GTCCCCGCTGAGCTGTGGATGCTCCGAAGGGCAGGGGCCAGGGTCCTGGGCCGGCAGCCG
GACGCTTCCCTGCGCTGCCATCTGGTGGTAGAAGTTGGTCATTGCCGGCATCTTGGTTCA
AGGCCTGTCCTGATGCCACCCTTTCCTCCAGCTGACCTCCCTTTTTTTCTTTCCATTTGG
TCTTTTGTTGAATAAATATTTTTTAAGCCTCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-200, - strand, RNAz p=0.62227

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, - strand, RNAz p=0.62227

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-748, gnl|bosTau2|chr19 (46249214-46248429)
               

               
               1-748, gnl|Hg17|chr17 (74501586-74500892)
               

               
               1-748, gnl|Mm7|chr11 (118517128-118516389)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-748, gnl|bosTau2|chr19 (46249214-46248429)
               

               
               1-748, gnl|Hg17|chr17 (74501586-74500892)
               

               
               1-748, gnl|Mm7|chr11 (118517128-118516389)

	1-748, gnl\|bosTau2\|chr19 (46249214-46248429)
	1-748, gnl\|Hg17\|chr17 (74501586-74500892)
	1-748, gnl\|Mm7\|chr11 (118517128-118516389)