Non-Coding RNA Search

Ss1.1-Pig4-TMW8043D18.3

Sequence:


               
               GGTCTCTGTTACCAAAGCTTGTCTTTGGACAAATCTCTGTTACCAAAGACTTCTCCTCAG
GTAGAAGAGAAGACTGTTGAATAGAGAAAGGGTGGTGTCACTTTAACACGGGGGGGAAAC
GAGCAAAACACAAAGCACATATATTTAAGGAGTAGTTCATTTATATTTGCAAGGTAAACA
TTTCTTAAATATTGAAATTAAGTGGTCAGTTTTCTCTCTTCCTCTCTTTCTTTTACCACA
GAGAAGTATCGTTACCTGAGAAAGAAACCACTAGATTTTTCTTTTTCTCTAAGAATGATG
AGAGACTCCATGGTAAGTCAATTTTTTGGGTTAGTGTAGAACAGGTAATAGTACAGCTAT
TGTTGCATGGTGCATTCTGATATATTAACATGCATCCAAGCAATGATTGGGGAAAACTCT
GATCCTTTGCAATGTCATGTGCTTTAGCCCCCTCTGTTAATGCATGTTGATTTGTAAAGC
TCTGGAGGCACACCCATCACCTCCCTCACTCTTTTGCTATCATTAGAAAGGGCTTGTTTT
GTTCCAGGCACTTGTTGAGATGCTAGACATACAAAACTCCTTAAGTTTTTAGTTCACATG
AACTATACTCAATATTGATAATAATCTGTAATGGAAAATAATCTGGAAAAGAAGATAGAT
AAATAGACAGACAAACCAAAAAACTCACATGAAAATTCTGAGGCTCTTGATGAACTCATT
TCTTATGTGTAACACAAACAGAAACCAAACCAGACTGACTAACAGTAAATGGTTTATTTA
TTTATTTATTTATTTTTGGTCTTCTTGTCTTTTAGGGCTCCATATGCCGCAGGTGTGGCT
CTAAAAGGACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTCTGTTACCAAAGCTTGTCTTTGGACAAATCTCTGTTACCAAAGACTTCTCCTCAG
GTAGAAGAGAAGACTGTTGAATAGAGAAAGGGTGGTGTCACTTTAACACGGGGGGGAAAC
GAGCAAAACACAAAGCACATATATTTAAGGAGTAGTTCATTTATATTTGCAAGGTAAACA
TTTCTTAAATATTGAAATTAAGTGGTCAGTTTTCTCTCTTCCTCTCTTTCTTTTACCACA
GAGAAGTATCGTTACCTGAGAAAGAAACCACTAGATTTTTCTTTTTCTCTAAGAATGATG
AGAGACTCCATGGTAAGTCAATTTTTTGGGTTAGTGTAGAACAGGTAATAGTACAGCTAT
TGTTGCATGGTGCATTCTGATATATTAACATGCATCCAAGCAATGATTGGGGAAAACTCT
GATCCTTTGCAATGTCATGTGCTTTAGCCCCCTCTGTTAATGCATGTTGATTTGTAAAGC
TCTGGAGGCACACCCATCACCTCCCTCACTCTTTTGCTATCATTAGAAAGGGCTTGTTTT
GTTCCAGGCACTTGTTGAGATGCTAGACATACAAAACTCCTTAAGTTTTTAGTTCACATG
AACTATACTCAATATTGATAATAATCTGTAATGGAAAATAATCTGGAAAAGAAGATAGAT
AAATAGACAGACAAACCAAAAAACTCACATGAAAATTCTGAGGCTCTTGATGAACTCATT
TCTTATGTGTAACACAAACAGAAACCAAACCAGACTGACTAACAGTAAATGGTTTATTTA
TTTATTTATTTATTTTTGGTCTTCTTGTCTTTTAGGGCTCCATATGCCGCAGGTGTGGCT
CTAAAAGGACAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               196-348, - strand, RNAz p=0.999826

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-348, - strand, RNAz p=0.999826

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               31-653, gnl|bosTau2|chr8 (46683921-46684556)
               

               
               31-653, gnl|Hg17|chr9 (92141045-92140449)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-653, gnl|bosTau2|chr8 (46683921-46684556)
               

               
               31-653, gnl|Hg17|chr9 (92141045-92140449)

	31-653, gnl\|bosTau2\|chr8 (46683921-46684556)
	31-653, gnl\|Hg17\|chr9 (92141045-92140449)