Non-Coding RNA Search

Ss1.1-Pig4-TMW8043E11.3

Sequence:


               
               GGCAACCATCAGTCTGATTTCTGTCATTTTCTAAAATTTCATATGATTGGAATCATACAT
TAGATTTTGAGTCAATCATAGGTTTTGAAGATACTTAGTAATGTAGTTTATCACCAGAAA
TAGCAGAAATTCAAGCATGTGCATTTGATTGCTAATATAGACAGTGTTTTGAACACCGAT
ACTGTCTCATTTGAGACGGACACTGTGGGGCTACATGAGCTTTTATGTCTCTATCTTGTA
TGTTTTCTCAAGTGATATTTAATTTTAAGACTAATGTGAATTTTTTCCCTTTAAGATTAC
TTTTCAATTGCGCCATATTTTGAAAGCACGGTGTGATCCTGTCCCTGCTGCTAATGGAGC
AATACGTTTCCATTGTGATCCCACCTTCTGGGCAAAGAATGTAGTCAATTTAGGTGAGAA
ATAAATAGATTTATGGCTATAACTTGGAACACTGAATTAGGAGAAAGACTCTAAATCAAA
TTTTAGCTACTTAAAGTTTTAAAACTTCATTCTAACTGTAAACTTTTTGGAAAATATGTT
CTTCATTGGAAACTCACATCAGCTATGTTCATTACATCTTTATGAATGTTGAGAGTCTCC
TCTTTATAGCTTTTAAAAATATACATCATTTCTAACTTTCCCCCCACATCTTTTAAGATT
GATAATGACTGTTTCATTTCAAAAACTTAGCAAATAGGTCTTTATTCTCTGGATGAATTT
CTTAGATGCCTAATGGTTTATGTAGTAATTCTTCCAAATTGCCCACTTGAGGAGGACCTC
CAGGATACTGATGTGTCCAAATGCTATGTTCTGAGAATGTTGGAAAGATAAGATTAGCTC
TTTTTCACATGGAAGAGAAATGGACTTTGCTTTTGTTACTCCACAGTGTGGACCTAAGGA
CCATAGATAAAAGTTACAGATGGACAGAAAAACAGCTCAGTTTAAAATAGAACAACAACA
AAAAACCCTTAAAACTAACCAACAATTAGAGCTGTCTGCAGATTAAGTAAACTCATTTTC
AAAGTAGTGAAGTCCTCACCATTGGAAACTGTAAAAGCAGAGGTAGATAGCCTTTTGTAA
AAAAAAGCAATCTTTGTTTATATTCAGGTTAGGCTATACCTTTAGATTAGACATTGGCAC
AATGTTTTTGTGTGACAGGGTAGCTACGTTTGGTTTTTACCTTTTAAAGAGCTGTGAAAA
CTAACAAGTAAAAAACAAAAGAGTACCCTGCCATATATATATAGCACAGGGAACTATGTC
CAATCACTTGTGATAGAACATGATGAAAGATAATATGAGAAAGAGAGTGTATGACTGGGT
CACTTTGCTGTACAGCAGAAATTGACAGAACAATGGGAATGAACTATTTAAAAAATTTAA
AAAAAGAATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAACCATCAGTCTGATTTCTGTCATTTTCTAAAATTTCATATGATTGGAATCATACAT
TAGATTTTGAGTCAATCATAGGTTTTGAAGATACTTAGTAATGTAGTTTATCACCAGAAA
TAGCAGAAATTCAAGCATGTGCATTTGATTGCTAATATAGACAGTGTTTTGAACACCGAT
ACTGTCTCATTTGAGACGGACACTGTGGGGCTACATGAGCTTTTATGTCTCTATCTTGTA
TGTTTTCTCAAGTGATATTTAATTTTAAGACTAATGTGAATTTTTTCCCTTTAAGATTAC
TTTTCAATTGCGCCATATTTTGAAAGCACGGTGTGATCCTGTCCCTGCTGCTAATGGAGC
AATACGTTTCCATTGTGATCCCACCTTCTGGGCAAAGAATGTAGTCAATTTAGGTGAGAA
ATAAATAGATTTATGGCTATAACTTGGAACACTGAATTAGGAGAAAGACTCTAAATCAAA
TTTTAGCTACTTAAAGTTTTAAAACTTCATTCTAACTGTAAACTTTTTGGAAAATATGTT
CTTCATTGGAAACTCACATCAGCTATGTTCATTACATCTTTATGAATGTTGAGAGTCTCC
TCTTTATAGCTTTTAAAAATATACATCATTTCTAACTTTCCCCCCACATCTTTTAAGATT
GATAATGACTGTTTCATTTCAAAAACTTAGCAAATAGGTCTTTATTCTCTGGATGAATTT
CTTAGATGCCTAATGGTTTATGTAGTAATTCTTCCAAATTGCCCACTTGAGGAGGACCTC
CAGGATACTGATGTGTCCAAATGCTATGTTCTGAGAATGTTGGAAAGATAAGATTAGCTC
TTTTTCACATGGAAGAGAAATGGACTTTGCTTTTGTTACTCCACAGTGTGGACCTAAGGA
CCATAGATAAAAGTTACAGATGGACAGAAAAACAGCTCAGTTTAAAATAGAACAACAACA
AAAAACCCTTAAAACTAACCAACAATTAGAGCTGTCTGCAGATTAAGTAAACTCATTTTC
AAAGTAGTGAAGTCCTCACCATTGGAAACTGTAAAAGCAGAGGTAGATAGCCTTTTGTAA
AAAAAAGCAATCTTTGTTTATATTCAGGTTAGGCTATACCTTTAGATTAGACATTGGCAC
AATGTTTTTGTGTGACAGGGTAGCTACGTTTGGTTTTTACCTTTTAAAGAGCTGTGAAAA
CTAACAAGTAAAAAACAAAAGAGTACCCTGCCATATATATATAGCACAGGGAACTATGTC
CAATCACTTGTGATAGAACATGATGAAAGATAATATGAGAAAGAGAGTGTATGACTGGGT
CACTTTGCTGTACAGCAGAAATTGACAGAACAATGGGAATGAACTATTTAAAAAATTTAA
AAAAAGAATTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1078-1179, + strand, RNAz p=0.587475

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1078-1179, + strand, RNAz p=0.587475

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1200, gnl|bosTau2|chr3 (26735259-26736446)
               

               
               2-1200, gnl|Hg17|chr1 (114682244-114681042)
               


               
               1240-1368, gnl|bosTau2|chr8 (19227017-19226889)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1200, gnl|bosTau2|chr3 (26735259-26736446)
               

               
               2-1200, gnl|Hg17|chr1 (114682244-114681042)
               


               
               1240-1368, gnl|bosTau2|chr8 (19227017-19226889)

	2-1200, gnl\|bosTau2\|chr3 (26735259-26736446)
	2-1200, gnl\|Hg17\|chr1 (114682244-114681042)

	1240-1368, gnl\|bosTau2\|chr8 (19227017-19226889)