Non-Coding RNA Search

Ss1.1-Pig4-TMW8043E23.5

Sequence:


               
               CAGGACAAGCAGGAGCTGCACCTCTTCATGCTGTCGGGCGTGCCCGATGCGGTCTTTGAC
CTCACGGACCTGGACGTGCTGAGGCTCGAGCTGATCCCCGAAGCGAAGATTCCCGCCAAG
ATCTCGCAGATGACCAACCTCCAAGAGCTGCACCTCTGCCACTGCCCCGCCAAAGTGGAG
CAGACCGCGTTCAGCTTCCTCCGCGATCACTTGAGGTGCCTTCACGTGAAGTTCACCGAC
GTGGCGGAGATCCCCGCCTGGGTGTACCTGCTCAAAAACCTGCGCGAGCTCTACCTGGTA
GGCAACCTGAACTCGGAAAACAACAAGATGATCGGACTGGAGTCTCTGCGGGAGTTGCGG
CACCTGAGGGTGCTCCAGGTGAAGAGCAATTTGACCAAAGTCCCCTCCAACATCACCGAC
GTGGCCCCGCATCTCACCAAGTTAGTCATTCACAATGACGGCACCAAACTCCTGGTACTG
AACAGCCTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGACAAGCAGGAGCTGCACCTCTTCATGCTGTCGGGCGTGCCCGATGCGGTCTTTGAC
CTCACGGACCTGGACGTGCTGAGGCTCGAGCTGATCCCCGAAGCGAAGATTCCCGCCAAG
ATCTCGCAGATGACCAACCTCCAAGAGCTGCACCTCTGCCACTGCCCCGCCAAAGTGGAG
CAGACCGCGTTCAGCTTCCTCCGCGATCACTTGAGGTGCCTTCACGTGAAGTTCACCGAC
GTGGCGGAGATCCCCGCCTGGGTGTACCTGCTCAAAAACCTGCGCGAGCTCTACCTGGTA
GGCAACCTGAACTCGGAAAACAACAAGATGATCGGACTGGAGTCTCTGCGGGAGTTGCGG
CACCTGAGGGTGCTCCAGGTGAAGAGCAATTTGACCAAAGTCCCCTCCAACATCACCGAC
GTGGCCCCGCATCTCACCAAGTTAGTCATTCACAATGACGGCACCAAACTCCTGGTACTG
AACAGCCTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               372-491, - strand, RNAz p=0.908333

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-491, - strand, RNAz p=0.908333

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK123611, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK123611, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-491, gnl|bosTau2|chr11 (78735194-78735684)
               

               
               1-491, gnl|Hg17|chr9 (128750270-128750760)
               

               
               1-491, gnl|Mm7|chr2 (30263759-30264249)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-491, gnl|bosTau2|chr11 (78735194-78735684)
               

               
               1-491, gnl|Hg17|chr9 (128750270-128750760)
               

               
               1-491, gnl|Mm7|chr2 (30263759-30264249)

	1-491, gnl\|bosTau2\|chr11 (78735194-78735684)
	1-491, gnl\|Hg17\|chr9 (128750270-128750760)
	1-491, gnl\|Mm7\|chr2 (30263759-30264249)