Ss1.1-Pig4-TMW8043F17.3
|
GCTGCCTCACTTGGGATATCGGGTGTTAGAGCATGGGGCTCACCAAGCAGTACCTACGCT
ATGTTGCCAGTGCAGTCTTTGGCCTTATTGGCAGCCAAAAAGGTAATATTGTCTTTGTGA
CACTTCGTGGTGAAAAAGGACGCTATGTGGCAGTACCAGCCTGTGAACATGTTTTCATCT
GGGACCTACGGAAAGGAGAGAAGATCCTCATCCTTCAGGGACTTAAACATGAAGTCACTT
GCTTATGCCCCTCCCCAGATGGGCTGCACTTGGCTGTTGGTTATGAGGATGGGTCTATCA
GAATCTTCAGTCTCCTGAGTGGAGAAGGAAATGTGACCTTCAATGGACACAAAGCAGCCG
TCACTTCCTTGAAGTATGATCAGCTGGGAGGCAGGCTGGCGTCTGGGTCCAAGGACACAG
ATATTATCGTGTGGGATGTGATCAATGAAAGCGGCCTCTACCGTCTAAAGGGACACAAGG
ACGCCATCACACAAGCATTGTTTCTACGAGAAAAGAATCTGCTAGTTAGTAGTGGAAAAG
ATACCATGGTGAAATGGTGGGACCTTGACACCCAGCACTGCTTCAAAACAGTGGTTGGCC
ACCGAACTGAGGTGTGGGGCTTGGTTCTGGTGTCCGAAGAAAAGCGGCTCATCACTGGGG
CCTCTGACAGTGAACTGAGGGCCTGGGACATAGCTTATCTGGAAGAGATTGAAGACCCAG
AAGAACCAGAGCCCAAGAAAATCAAAGGGTCTTCTCCCAGAATGCAGGACACAGATGAAA
CAGAGGATGGTACCCTGGAGATGGACGAAGCTCCTGAGGATCGCATCCTCACATGCAGAA
AAGCTGGCTCCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGCCTCACTTGGGATATCGGGTGTTAGAGCATGGGGCTCACCAAGCAGTACCTACGCT
ATGTTGCCAGTGCAGTCTTTGGCCTTATTGGCAGCCAAAAAGGTAATATTGTCTTTGTGA
CACTTCGTGGTGAAAAAGGACGCTATGTGGCAGTACCAGCCTGTGAACATGTTTTCATCT
GGGACCTACGGAAAGGAGAGAAGATCCTCATCCTTCAGGGACTTAAACATGAAGTCACTT
GCTTATGCCCCTCCCCAGATGGGCTGCACTTGGCTGTTGGTTATGAGGATGGGTCTATCA
GAATCTTCAGTCTCCTGAGTGGAGAAGGAAATGTGACCTTCAATGGACACAAAGCAGCCG
TCACTTCCTTGAAGTATGATCAGCTGGGAGGCAGGCTGGCGTCTGGGTCCAAGGACACAG
ATATTATCGTGTGGGATGTGATCAATGAAAGCGGCCTCTACCGTCTAAAGGGACACAAGG
ACGCCATCACACAAGCATTGTTTCTACGAGAAAAGAATCTGCTAGTTAGTAGTGGAAAAG
ATACCATGGTGAAATGGTGGGACCTTGACACCCAGCACTGCTTCAAAACAGTGGTTGGCC
ACCGAACTGAGGTGTGGGGCTTGGTTCTGGTGTCCGAAGAAAAGCGGCTCATCACTGGGG
CCTCTGACAGTGAACTGAGGGCCTGGGACATAGCTTATCTGGAAGAGATTGAAGACCCAG
AAGAACCAGAGCCCAAGAAAATCAAAGGGTCTTCTCCCAGAATGCAGGACACAGATGAAA
CAGAGGATGGTACCCTGGAGATGGACGAAGCTCCTGAGGATCGCATCCTCACATGCAGAA
AAGCTGGCTCCA
|
|
gi|61825871|ref|XP_596457.1| |
Protein identifier
|
gi|61825871|ref|XP_596457.1| |
|
202-400, + strand, RNAz p=0.979764 |
|
202-400, - strand, RNAz p=0.979764 |
|
202-371, + strand, RNAz p=0.867428 |
|
202-371, - strand, RNAz p=0.867428 |
|
703-821, - strand, RNAz p=0.572031 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
202-400, + strand, RNAz p=0.979764 |
|
202-400, - strand, RNAz p=0.979764 |
|
202-371, + strand, RNAz p=0.867428 |
|
202-371, - strand, RNAz p=0.867428 |
|
703-821, - strand, RNAz p=0.572031 |
Human gene identifier and UTR site,
human gene reading direction
|
202-414, gnl|bosTau2|chr3 (21281346-21281558) |
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202-414, gnl|canFam2|chr17 (58300341-58300539) |
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202-414, gnl|danRer3|chr9 (14362128-14362330) |
|
202-414, gnl|echTel1|scaffold_281240 (37485-37287) |
|
202-414, gnl|fr1|chrUn (78198378-78198566) |
|
202-414, gnl|galGal2|chr1 (73180819-73180601) |
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202-414, gnl|hg17|chr1 (118189126-118189325) |
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202-414, gnl|Hg17|chr1 (118189136-118189348) |
|
202-414, gnl|loxAfr1|scaffold_344 (101501-101303) |
|
202-414, gnl|mm7|chr3 (99954806-99954607) |
|
202-414, gnl|Mm7|chr3 (99954794-99954582) |
|
202-414, gnl|monDom2|scaffold_82 (4437471-4437670) |
|
202-414, gnl|oryCun1|scaffold_212732 (142307-142505) |
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202-414, gnl|panTro1|chr1 (118031860-118032059) |
|
202-414, gnl|rheMac2|chr1 (120892878-120893077) |
|
202-414, gnl|rn3|chr2 (195077215-195077016) |
|
202-414, gnl|tetNig1|chrUn_random (114822995-114823175) |
|
202-414, gnl|xenTro1|scaffold_905 (356826-356627) |
| |
|
703-821, gnl|bosTau2|chr3 (21287871-21287989) |
|
703-821, gnl|Mm7|chr3 (99948797-99948679) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
202-414, gnl|bosTau2|chr3 (21281346-21281558) |
|
202-414, gnl|canFam2|chr17 (58300341-58300539) |
|
202-414, gnl|danRer3|chr9 (14362128-14362330) |
|
202-414, gnl|echTel1|scaffold_281240 (37485-37287) |
|
202-414, gnl|fr1|chrUn (78198378-78198566) |
|
202-414, gnl|galGal2|chr1 (73180819-73180601) |
|
202-414, gnl|hg17|chr1 (118189126-118189325) |
|
202-414, gnl|Hg17|chr1 (118189136-118189348) |
|
202-414, gnl|loxAfr1|scaffold_344 (101501-101303) |
|
202-414, gnl|mm7|chr3 (99954806-99954607) |
|
202-414, gnl|Mm7|chr3 (99954794-99954582) |
|
202-414, gnl|monDom2|scaffold_82 (4437471-4437670) |
|
202-414, gnl|oryCun1|scaffold_212732 (142307-142505) |
|
202-414, gnl|panTro1|chr1 (118031860-118032059) |
|
202-414, gnl|rheMac2|chr1 (120892878-120893077) |
|
202-414, gnl|rn3|chr2 (195077215-195077016) |
|
202-414, gnl|tetNig1|chrUn_random (114822995-114823175) |
|
202-414, gnl|xenTro1|scaffold_905 (356826-356627) |
| |
|
703-821, gnl|bosTau2|chr3 (21287871-21287989) |
|
703-821, gnl|Mm7|chr3 (99948797-99948679) |
