Non-Coding RNA Search

Ss1.1-Pig4-TMW8043G21.3

Sequence:


               
               CTTGACTATTACGTTTGTTCTCTCTGGTCCATTGATAAAGCTCGTGTTGTATGTATGTAA
ACCTTATATGGCCTGGTTTTCAGGGACCTTTTTAACGTTTGTAACTTTATGTCACATATG
CATTCCTGATTTCCTGCCAAATGGGCTATTTTCTATTTTGTGAATATACTTGCCCAATTC
TGGCTATTTCTTTTTAAGTGTTAATTAAATTAATTTTTTTTTCTTGTATTTGGGCAGTCC
TTTCCTATTAGTATACTGCTGAAATTCAGCCTGTCTCCCAGAGCAGTATTTCTCAAAGTA
TGGTTCAAAGAATATACCTCTAACACAATAACTAGAAGTATGTTTTAAAAATATAGATTC
CTGGAGTTTCCTTGTTGCTCAGAATCTGGTGGTGTCATTGCTGTGGCTCGGGTTCATTCC
CTGGCCCAGGAATTTAGGCATGCTGACGATGCAGCCACCCCCCCAACCCAGCCAAAACCC
AGAAATACAGCTTCCTGAGCCCTTTCTCAGATATTCGGCTTCAGTAGTTTTAGGGTGGGA
TTCAGAGATCTGATTGGCAGCCTACTTCTGCTGTAGACTACTAGTATGTTTCAAATAAGC
TCTGTGTACCTGCAGCACGTAGGTCTAGGGAGTAGTATAGGTAACATTAAACAGCCCAGG
GGCATGCAGTGGAATGTGTGGGCAGTTTGAACAAGGGCTCGTGACTGTCAGGCTGTAGGG
TTCACTAGCAGTGGGGATAACTCGTCTGCCCTTGCTTTCTGTATTGATGGAACCCAAGGT
CACATGCTTGTATACACCAGTATAACAGAACGTGCCTTCTCTGTATTTACACTGCATAGA
TGTAAAAGACCAAAATGCAAGATAAAAAATGTAGTCTGAATAGGCTCTTGTAGTAATCCA
AATTTTTTTTTTCTTTTTACAGCTGCACCTGGGGCATATGGACATTCCAGGCCAGGGGTC
AAATTGGAGCTGCAGCTGTGGTGTAGGCCAGCAGCTGCAGTTCTGATTCAGTCCCTGGCC
TAGGAAGTCCAAAATGCCGTGAGTGCAGCCCTAAAAAAGATAAAAAAAAACCAAAACCAA
AAAACAAACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGACTATTACGTTTGTTCTCTCTGGTCCATTGATAAAGCTCGTGTTGTATGTATGTAA
ACCTTATATGGCCTGGTTTTCAGGGACCTTTTTAACGTTTGTAACTTTATGTCACATATG
CATTCCTGATTTCCTGCCAAATGGGCTATTTTCTATTTTGTGAATATACTTGCCCAATTC
TGGCTATTTCTTTTTAAGTGTTAATTAAATTAATTTTTTTTTCTTGTATTTGGGCAGTCC
TTTCCTATTAGTATACTGCTGAAATTCAGCCTGTCTCCCAGAGCAGTATTTCTCAAAGTA
TGGTTCAAAGAATATACCTCTAACACAATAACTAGAAGTATGTTTTAAAAATATAGATTC
CTGGAGTTTCCTTGTTGCTCAGAATCTGGTGGTGTCATTGCTGTGGCTCGGGTTCATTCC
CTGGCCCAGGAATTTAGGCATGCTGACGATGCAGCCACCCCCCCAACCCAGCCAAAACCC
AGAAATACAGCTTCCTGAGCCCTTTCTCAGATATTCGGCTTCAGTAGTTTTAGGGTGGGA
TTCAGAGATCTGATTGGCAGCCTACTTCTGCTGTAGACTACTAGTATGTTTCAAATAAGC
TCTGTGTACCTGCAGCACGTAGGTCTAGGGAGTAGTATAGGTAACATTAAACAGCCCAGG
GGCATGCAGTGGAATGTGTGGGCAGTTTGAACAAGGGCTCGTGACTGTCAGGCTGTAGGG
TTCACTAGCAGTGGGGATAACTCGTCTGCCCTTGCTTTCTGTATTGATGGAACCCAAGGT
CACATGCTTGTATACACCAGTATAACAGAACGTGCCTTCTCTGTATTTACACTGCATAGA
TGTAAAAGACCAAAATGCAAGATAAAAAATGTAGTCTGAATAGGCTCTTGTAGTAATCCA
AATTTTTTTTTTCTTTTTACAGCTGCACCTGGGGCATATGGACATTCCAGGCCAGGGGTC
AAATTGGAGCTGCAGCTGTGGTGTAGGCCAGCAGCTGCAGTTCTGATTCAGTCCCTGGCC
TAGGAAGTCCAAAATGCCGTGAGTGCAGCCCTAAAAAAGATAAAAAAAAACCAAAACCAA
AAAACAAACCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               603-722, + strand, RNAz p=0.828162

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               603-722, + strand, RNAz p=0.828162

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-363, gnl|bosTau2|chr21 (8065742-8066112)
               

               
               1-363, gnl|Hg17|chr15 (91296196-91297011)
               


               
               484-820, gnl|bosTau2|chr21 (8066099-8066426)
               

               
               484-820, gnl|Hg17|chr15 (91297012-91297287)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-363, gnl|bosTau2|chr21 (8065742-8066112)
               

               
               1-363, gnl|Hg17|chr15 (91296196-91297011)
               


               
               484-820, gnl|bosTau2|chr21 (8066099-8066426)
               

               
               484-820, gnl|Hg17|chr15 (91297012-91297287)

	1-363, gnl\|bosTau2\|chr21 (8065742-8066112)
	1-363, gnl\|Hg17\|chr15 (91296196-91297011)

	484-820, gnl\|bosTau2\|chr21 (8066099-8066426)
	484-820, gnl\|Hg17\|chr15 (91297012-91297287)