Non-Coding RNA Search

Ss1.1-Pig4-TMW8043J23.5

Sequence:


               
               CGCCCGTGTAGACGCGGCCCCTGTAGGTCACCCGCCATCCTCAGTTCTCTCGAGCTAGTC
TGTCCCTAGATTCCAGCAATATCAAACCGTAGGGTATTTCAGAAATCCAGTCTCCCAGGG
GGACCCTCCGGGACCCCGCGGTCTTCCACGGGGAAGCATCCAGGGCTCCGATCCCCTCCG
TTTCCCCCGACACGCTCGCTGGTGAGTTGGTCACGCAGATGGAGCCCTTTATCTCCAACC
TCAGAAATCATACCCTGTCACCGGAGCCCAGGAGTGACATGCGGAGAGGGGACGAAGATG
GGCTGGGGGTGGGGGACCAGGCTGGGTAGTGCGAGGAGGAGAGCGCGGTCTGCAGGTGCT
GGGGTACCTGCATCACTCAGCTGCACAAACTGCCTCACTGTCTGTCATCAGTCACTGCTT
CAGATGTCTCCATCAGCAGAAGATTGTACCTTCGATCTTTCAGGGACACCAATCTATTCT
GAAAGGCAATAAAAGGAAGACAGGAAAGGCAAGGCAAAGGAAGCACTGATAGTTTAAGAT
ACTACATAAAGGAAAATTTTTTTTTTTGTCCTATTATTAAGAAAATTTAGATCTAAAGTG
TTTTATCAACTTTTATTGTACTATGTATATTATATCGTTGTTGTGGGGGGGCCTTTAAAG
GGGAAAGTGTTGGGACTATTAATTTGTTAGTGTCCACCCTGGGGGGGCCTACCTAATTAC
ACATATAATAAGTACATCTCTGCTTACCAAGTGCTGTAAATGACAGCCAGGCTGTTTTCT
GAGAAAAGTTTGGATTTTCCCATCATCCCTTCGAATGCTACCCATCCGTCTCTTTTAACC
CAGTAGTTCAAGATGACAGAACTTTTTCTCCATCAGTCTTCTCTCACTACTACACAGAGT
CCTATCATATCCCCAAATGAGAATTTTTGTCCCATGTCAAACCGATAAAATTAGCTTTCT
GTCCCCGTAGAAGTGCTGCCTCATTCCAAAGAGCTACCACTCATCTAGGGGTCCCAGGTA
GAAAGAGAAGAAATCTGACCTGCAAGGTTCAGCAACCAGGTGGAGGGGGACAGCATCAGG
ATGCCTAAACACAAAAGAAACCCAGGCTTTTGGCAGAGAATGTTGATTTCCGTTTTCAGT
TATGATGGATGGGCAGTATGACCTTTGCATCCAGCTGAAATTATCTTTAAATGCCCTTAC
TGGTAGCCATTTAAACATCTAGAATGAAGTGATCTTAAATGATCACTGGCATTGTATCCA
GCTCCCTAAAGCGTTAGAAATTACCATTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCGTGTAGACGCGGCCCCTGTAGGTCACCCGCCATCCTCAGTTCTCTCGAGCTAGTC
TGTCCCTAGATTCCAGCAATATCAAACCGTAGGGTATTTCAGAAATCCAGTCTCCCAGGG
GGACCCTCCGGGACCCCGCGGTCTTCCACGGGGAAGCATCCAGGGCTCCGATCCCCTCCG
TTTCCCCCGACACGCTCGCTGGTGAGTTGGTCACGCAGATGGAGCCCTTTATCTCCAACC
TCAGAAATCATACCCTGTCACCGGAGCCCAGGAGTGACATGCGGAGAGGGGACGAAGATG
GGCTGGGGGTGGGGGACCAGGCTGGGTAGTGCGAGGAGGAGAGCGCGGTCTGCAGGTGCT
GGGGTACCTGCATCACTCAGCTGCACAAACTGCCTCACTGTCTGTCATCAGTCACTGCTT
CAGATGTCTCCATCAGCAGAAGATTGTACCTTCGATCTTTCAGGGACACCAATCTATTCT
GAAAGGCAATAAAAGGAAGACAGGAAAGGCAAGGCAAAGGAAGCACTGATAGTTTAAGAT
ACTACATAAAGGAAAATTTTTTTTTTTGTCCTATTATTAAGAAAATTTAGATCTAAAGTG
TTTTATCAACTTTTATTGTACTATGTATATTATATCGTTGTTGTGGGGGGGCCTTTAAAG
GGGAAAGTGTTGGGACTATTAATTTGTTAGTGTCCACCCTGGGGGGGCCTACCTAATTAC
ACATATAATAAGTACATCTCTGCTTACCAAGTGCTGTAAATGACAGCCAGGCTGTTTTCT
GAGAAAAGTTTGGATTTTCCCATCATCCCTTCGAATGCTACCCATCCGTCTCTTTTAACC
CAGTAGTTCAAGATGACAGAACTTTTTCTCCATCAGTCTTCTCTCACTACTACACAGAGT
CCTATCATATCCCCAAATGAGAATTTTTGTCCCATGTCAAACCGATAAAATTAGCTTTCT
GTCCCCGTAGAAGTGCTGCCTCATTCCAAAGAGCTACCACTCATCTAGGGGTCCCAGGTA
GAAAGAGAAGAAATCTGACCTGCAAGGTTCAGCAACCAGGTGGAGGGGGACAGCATCAGG
ATGCCTAAACACAAAAGAAACCCAGGCTTTTGGCAGAGAATGTTGATTTCCGTTTTCAGT
TATGATGGATGGGCAGTATGACCTTTGCATCCAGCTGAAATTATCTTTAAATGCCCTTAC
TGGTAGCCATTTAAACATCTAGAATGAAGTGATCTTAAATGATCACTGGCATTGTATCCA
GCTCCCTAAAGCGTTAGAAATTACCATTGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               277-388, + strand, RNAz p=0.59905

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-388, + strand, RNAz p=0.59905

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               118-1294, gnl|bosTau2|chr24 (26578884-26580069)
               

               
               118-1294, gnl|Hg17|chr18 (3488781-3487628)
               

               
               118-1294, gnl|Mm7|chr17 (69097834-69098979)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-1294, gnl|bosTau2|chr24 (26578884-26580069)
               

               
               118-1294, gnl|Hg17|chr18 (3488781-3487628)
               

               
               118-1294, gnl|Mm7|chr17 (69097834-69098979)

	118-1294, gnl\|bosTau2\|chr24 (26578884-26580069)
	118-1294, gnl\|Hg17\|chr18 (3488781-3487628)
	118-1294, gnl\|Mm7\|chr17 (69097834-69098979)