Ss1.1-Pig4-TMW8043O24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCGAGGCCAAAACCCAGCACATCCTGTATGTTGAAGTCACCAATGAAGCTCCCTTTG TGGTGAAGCTCCCAACCTCCACAGCCACCGTCGTGGTCCACGTGGAGGATGTGAATGAGG CGCCCGTGTTCGTCCCACCCTCCAAAGTCATCGAGGTCCAGGAGGGTACCTCCGTGGGAG AGCCCATCTGCACCTACACCGCGCAGGATCCAGACAAGGGGAGTCAGAAGATCAGCTACC ACATCCTGAGTGACCCGGCACGGTGGCTAGCGATGGACTCTGACACTGGGCAGGTCACTG CCCTGGGGGTCTTGGACCGCGAGGACGAGCAGTTTGTGACAAACAACATCTATGAAGTCA TGGTCTTGGCCACAGACGATGGGAGCCCTCCCACCACTGGCACGGGGACCCTCCTGCTAA CGCTGATGGACGTCAATGACCACGGCCCGGTCCCTGAGCCTCGTGAGATCACCATCTGCA ACCAAAGCCCGGTGCCCCAAGTGCTGAACGTCACGGACAAAGACCTGTCCCCCCACACCT CCCCTTTCCAGGCCCGGCTCACACACGACTCGGACGTCTACTGGACAGCAGAGGTCAACG AGCAAGGAGATACAGTGGCCTTGTCCCTGAAGAAGTTCCTAAAGCAAGGCACATACGACG TGCACCTCTCATTGTCCGACCACGGCAACAAGGAGCAGCTGACGGTGATCAAGTCCACTG TGTGTGACTGCCACGGCCACGTGGCGAACTGCCTCGGTTCCTGGAAGGGGGGTTTCCTCA TGCCCATCCTGGGCGCTGTCCTGGCTCTGCTGCTCCTCCTGCTGGTGCTCCTGTTTCTGG TGAGAAGGAAGCGGAAGATCAAGGAGCCCCTTCTGCTCCCGGAAGACGACACCCGAGACA ACGTCTTCTACTACGGCGAAGAGGGGGGTGGCGAGGAGGACCAGGACTACGACATCACCC AACTCCACCGGGGGCTGGAGGTGCGGCCTGAGGTGGTTCTTCGCAACGACGTGGCGCCAA CCTTCATCCCCACACCCTTGTACCGTCCGCGGCCGGCCAACCCAGATGAAATCGGCAACT TCATCATCGAGAACCTGAAGGCCGCCAACACAGACCCCACGGCCCCACCCTACGACTCCC TGCTGGTGTTCGACTATGAGGGCAGTGGCTCCGAAGCCGCCTCCCTGAGCTCGCTCACCT CCTCGGCCTCTGACCAGGACCAAGACTACGACTATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCGAGGCCAAAACCCAGCACATCCTGTATGTTGAAGTCACCAATGAAGCTCCCTTTG TGGTGAAGCTCCCAACCTCCACAGCCACCGTCGTGGTCCACGTGGAGGATGTGAATGAGG CGCCCGTGTTCGTCCCACCCTCCAAAGTCATCGAGGTCCAGGAGGGTACCTCCGTGGGAG AGCCCATCTGCACCTACACCGCGCAGGATCCAGACAAGGGGAGTCAGAAGATCAGCTACC ACATCCTGAGTGACCCGGCACGGTGGCTAGCGATGGACTCTGACACTGGGCAGGTCACTG CCCTGGGGGTCTTGGACCGCGAGGACGAGCAGTTTGTGACAAACAACATCTATGAAGTCA TGGTCTTGGCCACAGACGATGGGAGCCCTCCCACCACTGGCACGGGGACCCTCCTGCTAA CGCTGATGGACGTCAATGACCACGGCCCGGTCCCTGAGCCTCGTGAGATCACCATCTGCA ACCAAAGCCCGGTGCCCCAAGTGCTGAACGTCACGGACAAAGACCTGTCCCCCCACACCT CCCCTTTCCAGGCCCGGCTCACACACGACTCGGACGTCTACTGGACAGCAGAGGTCAACG AGCAAGGAGATACAGTGGCCTTGTCCCTGAAGAAGTTCCTAAAGCAAGGCACATACGACG TGCACCTCTCATTGTCCGACCACGGCAACAAGGAGCAGCTGACGGTGATCAAGTCCACTG TGTGTGACTGCCACGGCCACGTGGCGAACTGCCTCGGTTCCTGGAAGGGGGGTTTCCTCA TGCCCATCCTGGGCGCTGTCCTGGCTCTGCTGCTCCTCCTGCTGGTGCTCCTGTTTCTGG TGAGAAGGAAGCGGAAGATCAAGGAGCCCCTTCTGCTCCCGGAAGACGACACCCGAGACA ACGTCTTCTACTACGGCGAAGAGGGGGGTGGCGAGGAGGACCAGGACTACGACATCACCC AACTCCACCGGGGGCTGGAGGTGCGGCCTGAGGTGGTTCTTCGCAACGACGTGGCGCCAA CCTTCATCCCCACACCCTTGTACCGTCCGCGGCCGGCCAACCCAGATGAAATCGGCAACT TCATCATCGAGAACCTGAAGGCCGCCAACACAGACCCCACGGCCCCACCCTACGACTCCC TGCTGGTGTTCGACTATGAGGGCAGTGGCTCCGAAGCCGCCTCCCTGAGCTCGCTCACCT CCTCGGCCTCTGACCAGGACCAAGACTACGACTATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 381-499, - strand, RNAz p=0.605939 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 381-499, - strand, RNAz p=0.605939 |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 1-238, gnl|bosTau2|chr18 (14355116-14354879) | |
| 1-238, gnl|canFam2|chr5 (83885368-83885086) | |
| 1-238, gnl|danRer3|chr7 (49941031-49940777) | |
| 1-238, gnl|dasNov1|scaffold_29072 (41589-41856) | |
| 1-238, gnl|echTel1|scaffold_310060 (41095-41373) | |
| 1-238, gnl|fr1|chrUn (310172022-310171736) | |
| 1-238, gnl|galGal2|chr11_random (64843-65131) | |
| 1-238, gnl|hg17|chr16 (67275968-67276251) | |
| 1-238, gnl|Hg17|chr16 (67275994-67276231) | |
| 1-238, gnl|loxAfr1|scaffold_2149 (33042-32760) | |
| 1-238, gnl|mm7|chr8 (105142283-105142558) | |
| 1-238, gnl|Mm7|chr8 (105142303-105142540) | |
| 1-238, gnl|monDom2|scaffold_23 (5532452-5532180) | |
| 1-238, gnl|oryCun1|scaffold_204693 (1050-769) | |
| 1-238, gnl|panTro1|chr18 (61587614-61587896) | |
| 1-238, gnl|rheMac2|chr20 (67036726-67037008) | |
| 1-238, gnl|rn3|chr19 (36384334-36384609) | |
| 1-238, gnl|tetNig1|chrUn_random (31149960-31149697) | |
| 1-238, gnl|xenTro1|scaffold_132 (1634435-1634150) | |
| 381-618, gnl|bosTau2|chr18 (14353562-14353325) | |
| 381-618, gnl|Hg17|chr16 (67278915-67279156) | |
| 381-618, gnl|Mm7|chr8 (105143647-105143882) | |
| 814-945, gnl|bosTau2|chr18 (14347119-14346988) | |
| 814-945, gnl|canFam2|chr5 (83876388-83876229) | |
| 814-945, gnl|danRer3|chr7 (49939005-49938859) | |
| 814-945, gnl|dasNov1|scaffold_140700 (3983-4110) | |
| 814-945, gnl|echTel1|scaffold_310060 (47651-47807) | |
| 814-945, gnl|fr1|chrUn (310168492-310168352) | |
| 814-945, gnl|galGal2|chr11_random (72489-72634) | |
| 814-945, gnl|hg17|chr16 (67286637-67286796) | |
| 814-945, gnl|Hg17|chr16 (67286659-67286790) | |
| 814-945, gnl|loxAfr1|scaffold_19933 (872-1021) | |
| 814-945, gnl|mm7|chr8 (105151011-105151171) | |
| 814-945, gnl|Mm7|chr8 (105151034-105151165) | |
| 814-945, gnl|monDom2|scaffold_23 (5527828-5527676) | |
| 814-945, gnl|oryCun1|scaffold_168224 (5659-5808) | |
| 814-945, gnl|panTro1|chr18 (61598918-61599077) | |
| 814-945, gnl|rheMac2|chr20 (67049731-67049888) | |
| 814-945, gnl|rn3|chr19 (36395209-36395368) | |
| 814-945, gnl|tetNig1|chrUn_random (31147809-31147669) | |
| 814-945, gnl|xenTro1|scaffold_132 (1631821-1631669) | |
| 1082-1236, gnl|bosTau2|chr18 (14343959-14343805) | |
| 1082-1236, gnl|canFam2|chr5 (83873655-83873546) | |
| 1082-1236, gnl|danRer3|chr7 (49936806-49936697) | |
| 1082-1236, gnl|dasNov1|scaffold_44167 (14716-14606) | |
| 1082-1236, gnl|echTel1|scaffold_310060 (51551-51656) | |
| 1082-1236, gnl|fr1|chrUn (310167191-310167091) | |
| 1082-1236, gnl|galGal2|chr11_random (72952-73054) | |
| 1082-1236, gnl|hg17|chr16 (67289574-67289684) | |
| 1082-1236, gnl|Hg17|chr16 (67289584-67289739) | |
| 1082-1236, gnl|loxAfr1|scaffold_40326 (20788-20702) | |
| 1082-1236, gnl|mm7|chr8 (105153866-105153975) | |
| 1082-1236, gnl|Mm7|chr8 (105153875-105154030) | |
| 1082-1236, gnl|monDom2|scaffold_23 (5526140-5526033) | |
| 1082-1236, gnl|oryCun1|scaffold_207630 (9990-10096) | |
| 1082-1236, gnl|panTro1|chr18 (61601870-61601980) | |
| 1082-1236, gnl|rheMac2|chr20 (67052659-67052769) | |
| 1082-1236, gnl|rn3|chr19 (36397805-36397914) | |
| 1082-1236, gnl|tetNig1|chrUn_random (31147287-31147185) | |
| 1082-1236, gnl|xenTro1|scaffold_132 (1627780-1627669) | |
| 1101-1229, gnl|bosTau2|chr13 (36332808-36332677) | |
| 1101-1229, gnl|canFam2|chr24 (49110510-49110721) | |
| 1101-1229, gnl|danRer3|chr15 (29380366-29380155) | |
| 1101-1229, gnl|dasNov1|scaffold_52742 (9965-9760) | |
| 1101-1229, gnl|echTel1|scaffold_287341 (97022-97220) | |
| 1101-1229, gnl|fr1|chrUn (148012371-148012582) | |
| 1101-1229, gnl|galGal2|chr20 (7378550-7378757) | |
| 1101-1229, gnl|hg17|chr20 (59945188-59945399) | |
| 1101-1229, gnl|Hg17|chr20 (59945199-59945330) | |
| 1101-1229, gnl|loxAfr1|scaffold_19933 (3885-4083) | |
| 1101-1229, gnl|mm7|chr2 (180396623-180396834) | |
| 1101-1229, gnl|Mm7|chr2 (180396634-180396765) | |
| 1101-1229, gnl|monDom2|scaffold_1 (179083825-179084036) | |
| 1101-1229, gnl|oryCun1|scaffold_175042 (44959-45168) | |
| 1101-1229, gnl|panTro1|chr21 (62951465-62951676) | |
| 1101-1229, gnl|rheMac2|chr10 (2593016-2592806) | |
| 1101-1229, gnl|rn3|chr3 (168885207-168885418) | |
| 1101-1229, gnl|tetNig1|chr15 (6793696-6793491) | |
| 1101-1229, gnl|xenTro1|scaffold_220 (321613-321824) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-238, gnl|bosTau2|chr18 (14355116-14354879) | |
| 1-238, gnl|canFam2|chr5 (83885368-83885086) | |
| 1-238, gnl|danRer3|chr7 (49941031-49940777) | |
| 1-238, gnl|dasNov1|scaffold_29072 (41589-41856) | |
| 1-238, gnl|echTel1|scaffold_310060 (41095-41373) | |
| 1-238, gnl|fr1|chrUn (310172022-310171736) | |
| 1-238, gnl|galGal2|chr11_random (64843-65131) | |
| 1-238, gnl|hg17|chr16 (67275968-67276251) | |
| 1-238, gnl|Hg17|chr16 (67275994-67276231) | |
| 1-238, gnl|loxAfr1|scaffold_2149 (33042-32760) | |
| 1-238, gnl|mm7|chr8 (105142283-105142558) | |
| 1-238, gnl|Mm7|chr8 (105142303-105142540) | |
| 1-238, gnl|monDom2|scaffold_23 (5532452-5532180) | |
| 1-238, gnl|oryCun1|scaffold_204693 (1050-769) | |
| 1-238, gnl|panTro1|chr18 (61587614-61587896) | |
| 1-238, gnl|rheMac2|chr20 (67036726-67037008) | |
| 1-238, gnl|rn3|chr19 (36384334-36384609) | |
| 1-238, gnl|tetNig1|chrUn_random (31149960-31149697) | |
| 1-238, gnl|xenTro1|scaffold_132 (1634435-1634150) | |
| 381-618, gnl|bosTau2|chr18 (14353562-14353325) | |
| 381-618, gnl|Hg17|chr16 (67278915-67279156) | |
| 381-618, gnl|Mm7|chr8 (105143647-105143882) | |
| 814-945, gnl|bosTau2|chr18 (14347119-14346988) | |
| 814-945, gnl|canFam2|chr5 (83876388-83876229) | |
| 814-945, gnl|danRer3|chr7 (49939005-49938859) | |
| 814-945, gnl|dasNov1|scaffold_140700 (3983-4110) | |
| 814-945, gnl|echTel1|scaffold_310060 (47651-47807) | |
| 814-945, gnl|fr1|chrUn (310168492-310168352) | |
| 814-945, gnl|galGal2|chr11_random (72489-72634) | |
| 814-945, gnl|hg17|chr16 (67286637-67286796) | |
| 814-945, gnl|Hg17|chr16 (67286659-67286790) | |
| 814-945, gnl|loxAfr1|scaffold_19933 (872-1021) | |
| 814-945, gnl|mm7|chr8 (105151011-105151171) | |
| 814-945, gnl|Mm7|chr8 (105151034-105151165) | |
| 814-945, gnl|monDom2|scaffold_23 (5527828-5527676) | |
| 814-945, gnl|oryCun1|scaffold_168224 (5659-5808) | |
| 814-945, gnl|panTro1|chr18 (61598918-61599077) | |
| 814-945, gnl|rheMac2|chr20 (67049731-67049888) | |
| 814-945, gnl|rn3|chr19 (36395209-36395368) | |
| 814-945, gnl|tetNig1|chrUn_random (31147809-31147669) | |
| 814-945, gnl|xenTro1|scaffold_132 (1631821-1631669) | |
| 1082-1236, gnl|bosTau2|chr18 (14343959-14343805) | |
| 1082-1236, gnl|canFam2|chr5 (83873655-83873546) | |
| 1082-1236, gnl|danRer3|chr7 (49936806-49936697) | |
| 1082-1236, gnl|dasNov1|scaffold_44167 (14716-14606) | |
| 1082-1236, gnl|echTel1|scaffold_310060 (51551-51656) | |
| 1082-1236, gnl|fr1|chrUn (310167191-310167091) | |
| 1082-1236, gnl|galGal2|chr11_random (72952-73054) | |
| 1082-1236, gnl|hg17|chr16 (67289574-67289684) | |
| 1082-1236, gnl|Hg17|chr16 (67289584-67289739) | |
| 1082-1236, gnl|loxAfr1|scaffold_40326 (20788-20702) | |
| 1082-1236, gnl|mm7|chr8 (105153866-105153975) | |
| 1082-1236, gnl|Mm7|chr8 (105153875-105154030) | |
| 1082-1236, gnl|monDom2|scaffold_23 (5526140-5526033) | |
| 1082-1236, gnl|oryCun1|scaffold_207630 (9990-10096) | |
| 1082-1236, gnl|panTro1|chr18 (61601870-61601980) | |
| 1082-1236, gnl|rheMac2|chr20 (67052659-67052769) | |
| 1082-1236, gnl|rn3|chr19 (36397805-36397914) | |
| 1082-1236, gnl|tetNig1|chrUn_random (31147287-31147185) | |
| 1082-1236, gnl|xenTro1|scaffold_132 (1627780-1627669) | |
| 1101-1229, gnl|bosTau2|chr13 (36332808-36332677) | |
| 1101-1229, gnl|canFam2|chr24 (49110510-49110721) | |
| 1101-1229, gnl|danRer3|chr15 (29380366-29380155) | |
| 1101-1229, gnl|dasNov1|scaffold_52742 (9965-9760) | |
| 1101-1229, gnl|echTel1|scaffold_287341 (97022-97220) | |
| 1101-1229, gnl|fr1|chrUn (148012371-148012582) | |
| 1101-1229, gnl|galGal2|chr20 (7378550-7378757) | |
| 1101-1229, gnl|hg17|chr20 (59945188-59945399) | |
| 1101-1229, gnl|Hg17|chr20 (59945199-59945330) | |
| 1101-1229, gnl|loxAfr1|scaffold_19933 (3885-4083) | |
| 1101-1229, gnl|mm7|chr2 (180396623-180396834) | |
| 1101-1229, gnl|Mm7|chr2 (180396634-180396765) | |
| 1101-1229, gnl|monDom2|scaffold_1 (179083825-179084036) | |
| 1101-1229, gnl|oryCun1|scaffold_175042 (44959-45168) | |
| 1101-1229, gnl|panTro1|chr21 (62951465-62951676) | |
| 1101-1229, gnl|rheMac2|chr10 (2593016-2592806) | |
| 1101-1229, gnl|rn3|chr3 (168885207-168885418) | |
| 1101-1229, gnl|tetNig1|chr15 (6793696-6793491) | |
| 1101-1229, gnl|xenTro1|scaffold_220 (321613-321824) |