Non-Coding RNA Search

Ss1.1-Pig4-TMW8044A04.3

Sequence:


               
               GTCCTGGGATGTAGTGGCAACACCTGTCTCGGCGTCAGCAGGTCCGGCTTCCCCTCTGAC
GTAGCCTCCGACAAGTCCTTTGGGTTTTCTGGGCCTTTCGTGTCGTTCTCCGGAAAGTGA
GGAGGCTGACTGCTCCCGATTGCCGAGTCCGGCTGAGGTCTAGCCGAGCCTCCTCGTTGA
GGAACGTGGGTCGACGTGGAGCGCAGGCCCCAGGCCGCCAAGATGGCGGCAGCTGTTACC
GCGCAGGTGAAATGCCCGGATGGAGGAACAGCGGGAGCCCCCTGCAGGCTAAGATGCAAG
ATTTCACCCCCAGAGACCCTGGTGGAGCGCCTCAAAGAGGTTGCTGCTGGTATTACAGCA
GACTGAAGGCTGTGTTCCATCTCCTCATGGGCTCCCGCCAGGCACCCCTGAGAGCACAGG
AGGGAAAGGCTTTCTTCTTGATCCTATTACTCCTGCCCAGCACCAGGCAGGATTAATTAA
CCCACCAGGTTTTGCTTCATTACCAGGAAGAAAGAAGAGCCAGCGACAGTGGATTCAAAC
ACGGAGAAGGCAAAGAATTCGGTGCTCGCGGGCCCGAGAGCCCTTCTAGGACAGCCGGCC
TGGCAAGAGGGTGACCCGGTGCCAGTACAAACCCTCAAGCGCCCTTGTGTGTCATCCTCA
GAATTCGTACTTGGAGTCCACAAAACCCGACACAGACTCTGAGCTGAGCCCCACGGGGGC
CAGTGACAAACTGTCTGCTTCTTCCGAGGCTCTGTGTCTCGGCGGAACTGGGAGTGTGAT
CGTACCTACCCTCCAGGGTTGTCGTGAGAATTAAGTAAATGTGGTACCGTGTGGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTGGGATGTAGTGGCAACACCTGTCTCGGCGTCAGCAGGTCCGGCTTCCCCTCTGAC
GTAGCCTCCGACAAGTCCTTTGGGTTTTCTGGGCCTTTCGTGTCGTTCTCCGGAAAGTGA
GGAGGCTGACTGCTCCCGATTGCCGAGTCCGGCTGAGGTCTAGCCGAGCCTCCTCGTTGA
GGAACGTGGGTCGACGTGGAGCGCAGGCCCCAGGCCGCCAAGATGGCGGCAGCTGTTACC
GCGCAGGTGAAATGCCCGGATGGAGGAACAGCGGGAGCCCCCTGCAGGCTAAGATGCAAG
ATTTCACCCCCAGAGACCCTGGTGGAGCGCCTCAAAGAGGTTGCTGCTGGTATTACAGCA
GACTGAAGGCTGTGTTCCATCTCCTCATGGGCTCCCGCCAGGCACCCCTGAGAGCACAGG
AGGGAAAGGCTTTCTTCTTGATCCTATTACTCCTGCCCAGCACCAGGCAGGATTAATTAA
CCCACCAGGTTTTGCTTCATTACCAGGAAGAAAGAAGAGCCAGCGACAGTGGATTCAAAC
ACGGAGAAGGCAAAGAATTCGGTGCTCGCGGGCCCGAGAGCCCTTCTAGGACAGCCGGCC
TGGCAAGAGGGTGACCCGGTGCCAGTACAAACCCTCAAGCGCCCTTGTGTGTCATCCTCA
GAATTCGTACTTGGAGTCCACAAAACCCGACACAGACTCTGAGCTGAGCCCCACGGGGGC
CAGTGACAAACTGTCTGCTTCTTCCGAGGCTCTGTGTCTCGGCGGAACTGGGAGTGTGAT
CGTACCTACCCTCCAGGGTTGTCGTGAGAATTAAGTAAATGTGGTACCGTGTGGGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               359-475, + strand, RNAz p=0.524124

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-475, + strand, RNAz p=0.524124

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               27-163, gnl|bosTau2|chr16 (50559438-50559302)
               

               
               27-163, gnl|Hg17|chr1 (206106573-206106437)
               


               
               359-838, gnl|bosTau2|chr16 (50524960-50524476)
               

               
               359-838, gnl|Hg17|chr1 (206079070-206078534)
               

               
               359-838, gnl|Mm7|chr1 (192986439-192986854)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-163, gnl|bosTau2|chr16 (50559438-50559302)
               

               
               27-163, gnl|Hg17|chr1 (206106573-206106437)
               


               
               359-838, gnl|bosTau2|chr16 (50524960-50524476)
               

               
               359-838, gnl|Hg17|chr1 (206079070-206078534)
               

               
               359-838, gnl|Mm7|chr1 (192986439-192986854)

	27-163, gnl\|bosTau2\|chr16 (50559438-50559302)
	27-163, gnl\|Hg17\|chr1 (206106573-206106437)

	359-838, gnl\|bosTau2\|chr16 (50524960-50524476)
	359-838, gnl\|Hg17\|chr1 (206079070-206078534)
	359-838, gnl\|Mm7\|chr1 (192986439-192986854)