Non-Coding RNA Search

Ss1.1-Pig4-TMW8044D09.5

Sequence:


               
               TCCCGGGTCGACCCACGCGTCCGCTTATATAATGCCAATTTGATCTTGTTCCCTGCTCTA
TATATTGACAGCCCAGTTGTGAAGGTAAAATATACTTTTCTTGAATGAATGATTCAGTCC
TTAAGTCAATGTCATAGTTTTGCTACCACTGAAATATCACAGAGGCCACATTATTGGCTG
TCTTCTCACAGTTCTTTAGTATACAGTATTGCCTGGGTAGAATCAAATTTTTAATTCTTT
TGGTCATTTTCTTCTTTTGTATCTGATATGGAATCATTTTTCCTTTATATATTCATGAAT
ATACACATTTCTAAACAAACATGATTTCCAAACAATTCTGCTGTGTGCCTATTTTTTATG
TTCCTTAAGTCTGGAAATTATTTGTTTGCTTTATTTTTTTCAGCCCAATATACAGACAGT
TTGGAGGGATATATTATTTTGTGTTGTTCTGTACAGTCTGTGCCTAATTTGCATTTCTTT
TTATTTCTACCTTGCCTCATTTTTTTTCAAATTTTTGATTTGTTATTCCCTTTCCTTTGT
GAAAACAAGTATTGAACATCATTGTACATAACATGTGTTGCCCTAAAAATATGCATTTGT
TCCTGGGTGTTTTTTCCTTCATAAGCTTCATACAAAGACTTAGTCCCAATAAATGTCACA
TGCCTCCCAAACTCTTGCATTGGATACCAACTTTTCTAGAGCTATCCCCCTGAGAAAAGT
GAAATGCTGCATGTGAAGCCTGATGTCTGTTGGTAAGCCAGCTAAGGAAGTTTGCTTTTG
CTGAATGTATCTTAAATAATTATACAGAAAAGTGAATACCATAATAGTGTTCTGTTTAAG
GTACATCATGAGTTCATGAATGCCTAAAACCTCAATTCTTTGATCTATTTCCCTTTATGT
GTAAATTACATATATATTAGAAAGAGAGAGTAAGAGAATAAAGGATGTTACAGTGGCAGC
TTTTTGCTGCATTGCTTTTGACTGCATCAGCATTTCTATTGTGGACCTCTATTTTCAGGG
GTTTTAGAGACTCACCCATAAAAATTTGCTTCAGGCTTAAAGTCTTGAAAGGTTTTTTTA
GGTATATAATTTTAAACCAATGTATCTTGTTTTTATATTATAGGAGGGAAATAAATGGAG
TTTACTAGTTCAATTTTGTGCTAATATAAATTTTAATGAACTTAATTTTTTAATAAAACA
TAAAGTCTAATTAGTCCATAGAGCACTGATGGTTTTTTAAATGAATCAGTTATTGACATA
GAGAGAATTGCCTGCTTTGTCAGTGTAGCAACCTATCTTTAAGATATTTTAAAACTTATA
ACATATTAATATTATCTTGATTCTAATAGTGGATCAGTATAATAAAGAATGCAATTTATG
CCATCCATATGAGCTATCTGGTAATATAGATTGGAAAATATATACTATATTTAGTAAATA
TATATGTATATATTTACTAGATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGGGTCGACCCACGCGTCCGCTTATATAATGCCAATTTGATCTTGTTCCCTGCTCTA
TATATTGACAGCCCAGTTGTGAAGGTAAAATATACTTTTCTTGAATGAATGATTCAGTCC
TTAAGTCAATGTCATAGTTTTGCTACCACTGAAATATCACAGAGGCCACATTATTGGCTG
TCTTCTCACAGTTCTTTAGTATACAGTATTGCCTGGGTAGAATCAAATTTTTAATTCTTT
TGGTCATTTTCTTCTTTTGTATCTGATATGGAATCATTTTTCCTTTATATATTCATGAAT
ATACACATTTCTAAACAAACATGATTTCCAAACAATTCTGCTGTGTGCCTATTTTTTATG
TTCCTTAAGTCTGGAAATTATTTGTTTGCTTTATTTTTTTCAGCCCAATATACAGACAGT
TTGGAGGGATATATTATTTTGTGTTGTTCTGTACAGTCTGTGCCTAATTTGCATTTCTTT
TTATTTCTACCTTGCCTCATTTTTTTTCAAATTTTTGATTTGTTATTCCCTTTCCTTTGT
GAAAACAAGTATTGAACATCATTGTACATAACATGTGTTGCCCTAAAAATATGCATTTGT
TCCTGGGTGTTTTTTCCTTCATAAGCTTCATACAAAGACTTAGTCCCAATAAATGTCACA
TGCCTCCCAAACTCTTGCATTGGATACCAACTTTTCTAGAGCTATCCCCCTGAGAAAAGT
GAAATGCTGCATGTGAAGCCTGATGTCTGTTGGTAAGCCAGCTAAGGAAGTTTGCTTTTG
CTGAATGTATCTTAAATAATTATACAGAAAAGTGAATACCATAATAGTGTTCTGTTTAAG
GTACATCATGAGTTCATGAATGCCTAAAACCTCAATTCTTTGATCTATTTCCCTTTATGT
GTAAATTACATATATATTAGAAAGAGAGAGTAAGAGAATAAAGGATGTTACAGTGGCAGC
TTTTTGCTGCATTGCTTTTGACTGCATCAGCATTTCTATTGTGGACCTCTATTTTCAGGG
GTTTTAGAGACTCACCCATAAAAATTTGCTTCAGGCTTAAAGTCTTGAAAGGTTTTTTTA
GGTATATAATTTTAAACCAATGTATCTTGTTTTTATATTATAGGAGGGAAATAAATGGAG
TTTACTAGTTCAATTTTGTGCTAATATAAATTTTAATGAACTTAATTTTTTAATAAAACA
TAAAGTCTAATTAGTCCATAGAGCACTGATGGTTTTTTAAATGAATCAGTTATTGACATA
GAGAGAATTGCCTGCTTTGTCAGTGTAGCAACCTATCTTTAAGATATTTTAAAACTTATA
ACATATTAATATTATCTTGATTCTAATAGTGGATCAGTATAATAAAGAATGCAATTTATG
CCATCCATATGAGCTATCTGGTAATATAGATTGGAAAATATATACTATATTTAGTAAATA
TATATGTATATATTTACTAGATAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               410-527, + strand, RNAz p=0.756008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               410-527, + strand, RNAz p=0.756008

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               26-1067, gnl|bosTau2|chr11 (45120841-45119809)
               

               
               26-1067, gnl|Hg17|chr8 (89116087-89115026)
               

               
               26-1067, gnl|Mm7|chr4 (18049931-18050879)
               


               
               1073-1463, gnl|bosTau2|chr11 (45119608-45119216)
               

               
               1073-1463, gnl|Hg17|chr8 (89115020-89114645)
               

               
               1073-1463, gnl|Mm7|chr4 (18050891-18051285)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1067, gnl|bosTau2|chr11 (45120841-45119809)
               

               
               26-1067, gnl|Hg17|chr8 (89116087-89115026)
               

               
               26-1067, gnl|Mm7|chr4 (18049931-18050879)
               


               
               1073-1463, gnl|bosTau2|chr11 (45119608-45119216)
               

               
               1073-1463, gnl|Hg17|chr8 (89115020-89114645)
               

               
               1073-1463, gnl|Mm7|chr4 (18050891-18051285)

	26-1067, gnl\|bosTau2\|chr11 (45120841-45119809)
	26-1067, gnl\|Hg17\|chr8 (89116087-89115026)
	26-1067, gnl\|Mm7\|chr4 (18049931-18050879)

	1073-1463, gnl\|bosTau2\|chr11 (45119608-45119216)
	1073-1463, gnl\|Hg17\|chr8 (89115020-89114645)
	1073-1463, gnl\|Mm7\|chr4 (18050891-18051285)