Non-Coding RNA Search

Ss1.1-Pig4-TMW8044E06.3

Sequence:


               
               GACCAAAATACTACCCCCGCGGAAAGGACGGGGGTTGAAGTTGGAAGCTATCGTGCAGAA
GATCACCTCCCCGAACATCAGGAGGAGCGCCTCCTCCAACAGCGCCGAGGCTGGGGGAGA
CACAGTCACTCTCGATGACATCCTGTCTCTGAAGAGCGGCCCTCCCGAAGCTGGGAGCGT
CGCTGCTCCGGATGCGGAGATGGAGAAGAGAAAAGGTGCAGGGGTATCTGACCTGGTGGG
TCCCACCAGCCAGGAGTCGAGCGTGGAAAAGCCTCTGGCCCGGTCCTCAGAGGAGTGGCG
CGGCGGTGGGGACGACAAAGTGAAGACCGAGGCACACCTAGACTCAGTTACTGCTGGAAA
GGAACCCGCTGGTGCCATGACGTCCGCAACCTCACAGAAGCCTGGGAGTAACCAAGGGAG
ACCGGATGGCTCCCTGGGCGGGGCAGCACCTTTAATCTTTCCTGACTCCAAGAATGTGCC
TCCAACGGGCATCCTGGCTCCTGAGGCGAACCCCAAGGCTGAAGAGAAGGAGAACGATAC
AGCGACCATCTCCCCCAAACAGGAGGGCTTCCCCCCAAAGGGTTACTTCCCATCGGGAAA
GAAGAAGGGGAGACCCATTGGTAGTGTGAATAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCAAAATACTACCCCCGCGGAAAGGACGGGGGTTGAAGTTGGAAGCTATCGTGCAGAA
GATCACCTCCCCGAACATCAGGAGGAGCGCCTCCTCCAACAGCGCCGAGGCTGGGGGAGA
CACAGTCACTCTCGATGACATCCTGTCTCTGAAGAGCGGCCCTCCCGAAGCTGGGAGCGT
CGCTGCTCCGGATGCGGAGATGGAGAAGAGAAAAGGTGCAGGGGTATCTGACCTGGTGGG
TCCCACCAGCCAGGAGTCGAGCGTGGAAAAGCCTCTGGCCCGGTCCTCAGAGGAGTGGCG
CGGCGGTGGGGACGACAAAGTGAAGACCGAGGCACACCTAGACTCAGTTACTGCTGGAAA
GGAACCCGCTGGTGCCATGACGTCCGCAACCTCACAGAAGCCTGGGAGTAACCAAGGGAG
ACCGGATGGCTCCCTGGGCGGGGCAGCACCTTTAATCTTTCCTGACTCCAAGAATGTGCC
TCCAACGGGCATCCTGGCTCCTGAGGCGAACCCCAAGGCTGAAGAGAAGGAGAACGATAC
AGCGACCATCTCCCCCAAACAGGAGGGCTTCCCCCCAAAGGGTTACTTCCCATCGGGAAA
GAAGAAGGGGAGACCCATTGGTAGTGTGAATAAGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-120, - strand, RNAz p=0.787674
               

               
               401-520, - strand, RNAz p=0.658823

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.787674
               

               
               401-520, - strand, RNAz p=0.658823

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               437-574, - strand, RNAmicro p=0.987126

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               437-574, - strand, RNAmicro p=0.987126

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr5 (68616888-68616253)
               

               
               1-636, gnl|Hg17|chr22 (40931796-40931161)
               

               
               1-636, gnl|Mm7|chr15 (82937548-82936913)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr5 (68616888-68616253)
               

               
               1-636, gnl|Hg17|chr22 (40931796-40931161)
               

               
               1-636, gnl|Mm7|chr15 (82937548-82936913)

	1-120, - strand, RNAz p=0.787674
	401-520, - strand, RNAz p=0.658823

	1-636, gnl\|bosTau2\|chr5 (68616888-68616253)
	1-636, gnl\|Hg17\|chr22 (40931796-40931161)
	1-636, gnl\|Mm7\|chr15 (82937548-82936913)