Non-Coding RNA Search

Ss1.1-Pig4-TMW8044E11.3

Sequence:


               
               CACCCACGGTGCTGACCCACCAGGCCCTGGTGCCACCCCAGGACGTGGTCAGCAAAGCTC
TCAGCGTCCAGCCTTTTCTGCAGCCCGTGGGCCTGGGCAACGTGACCCTGCAGCCCATCC
CCGGCCTCCAGGGCCTGCCCAATGGCAGCCCCGGGGGTGCCACGGCAGCCACGCTCGGCC
TGGCCCCCATCCAAGTGGTGGGCCAGCCCGTCATGGCCCTCAACCCGCCCACCTCCCAGC
TCCTGGCCAAGCAGGTGCCTGTCAGCGGTTATCTGGCCTCAGCAGCCGGCCCTTCAGAAC
CAGTGACCCTGGCATCGGCCGGTGTCTCACCCCAGGGGGCGGGGCTGGTCATCCAGAAGA
ACCTCCCAGCCGCCGTGGCCACCACGCTCAACGGGAACTCAGTGTTAGGAGGGGCAGGAG
CCGCCACGGCCGCAGCCAGTGGGGCGCCCTCGGGACAGCCGCTTGCAGTGGCCCCGGGCC
TTGGCACGTCGCCGCTGGTTCCTGCGCCCAACGTGATCCTGCACCGCACGCCCACGCCCA
TCCAGCCCAAGCCTGCCGGCGTGCTGCCCCCCAAGCTCTACCAGCTGACACCCAAGCCGT
TTGCCCCCGCGGGCGCCACACTCACCATCCAGGGCGAGGCGGGGGGCCTCCCACAGCAGC
CCAAAACCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCACGGTGCTGACCCACCAGGCCCTGGTGCCACCCCAGGACGTGGTCAGCAAAGCTC
TCAGCGTCCAGCCTTTTCTGCAGCCCGTGGGCCTGGGCAACGTGACCCTGCAGCCCATCC
CCGGCCTCCAGGGCCTGCCCAATGGCAGCCCCGGGGGTGCCACGGCAGCCACGCTCGGCC
TGGCCCCCATCCAAGTGGTGGGCCAGCCCGTCATGGCCCTCAACCCGCCCACCTCCCAGC
TCCTGGCCAAGCAGGTGCCTGTCAGCGGTTATCTGGCCTCAGCAGCCGGCCCTTCAGAAC
CAGTGACCCTGGCATCGGCCGGTGTCTCACCCCAGGGGGCGGGGCTGGTCATCCAGAAGA
ACCTCCCAGCCGCCGTGGCCACCACGCTCAACGGGAACTCAGTGTTAGGAGGGGCAGGAG
CCGCCACGGCCGCAGCCAGTGGGGCGCCCTCGGGACAGCCGCTTGCAGTGGCCCCGGGCC
TTGGCACGTCGCCGCTGGTTCCTGCGCCCAACGTGATCCTGCACCGCACGCCCACGCCCA
TCCAGCCCAAGCCTGCCGGCGTGCTGCCCCCCAAGCTCTACCAGCTGACACCCAAGCCGT
TTGCCCCCGCGGGCGCCACACTCACCATCCAGGGCGAGGCGGGGGGCCTCCCACAGCAGC
CCAAAACCCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61835828|ref|XP_610371.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835828|ref|XP_610371.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-279, - strand, RNAz p=0.879069
               

               
               555-672, - strand, RNAz p=0.511183

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-279, - strand, RNAz p=0.879069
               

               
               555-672, - strand, RNAz p=0.511183

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr18 (47588696-47589367)
               

               
               1-672, gnl|Hg17|chr19 (52874754-52875422)
               

               
               1-672, gnl|Mm7|chr7 (13751480-13750809)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr18 (47588696-47589367)
               

               
               1-672, gnl|Hg17|chr19 (52874754-52875422)
               

               
               1-672, gnl|Mm7|chr7 (13751480-13750809)

	80-279, - strand, RNAz p=0.879069
	555-672, - strand, RNAz p=0.511183

	1-672, gnl\|bosTau2\|chr18 (47588696-47589367)
	1-672, gnl\|Hg17\|chr19 (52874754-52875422)
	1-672, gnl\|Mm7\|chr7 (13751480-13750809)