Ss1.1-Pig4-TMW8044H07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGCTCTGATTATATTGCAGATTATTTGAACTCCAGAAGGACCAACACCAGATAAATTA TGAATGTTGAACAAGATGACCTTACATCCACAGCAGATAATGATAGGTCCTAGGTTTAAC AGGGCCTTATTTGACCCCCTGCTTGTGGTGCTGCTGGCTCTTCAACTTCTTGTGGTGGCT GGTCTGGTGCGGGCTCAAACCTGCCCTTCCGTCTGTTCCTGCAGCAACCAGTTCAGTAAG GTGATTTGTGTTCGGAAAAACCTACGGGAGGTTCCAGACGGCATCTCCACCAACACTCGG CTGCTGAACCTCCATGAGAACCAAATCCAGATCATCAAAGTGAACAGCTTCAAACACTTG AGGCACCTGGAAATCACATGACACTCCAGGCTGGACCTCACACCAGGGTTTCATGATCTC CAGGTTTGAAAAACCAATCATTGCTGGCAAAATAGGTCAGAGAGCTTCTATTCTTTCTCT TCTGCCACAAGGAGAAATATGAACTCCTACAAACTCTCTATTAGATAGAAACCAGCTGTA ATGCCATTTTTTTTCCAGGATATAAAATAAGATACATCCGACTCTGTTGAAGTGGTCTCC TCTTTTTCTTCTGGAGTAGGATATCTTTTTTAAGGTTTCCGGTCCATTTGGGTGAAGATT GCTCAGGCTTTAGTTGTGAATTTTGTTGTTTTTAGGAGAGAAGTTGCGTTCCAGTCCTTC TACGCCGCCATCTTAATCCCATCTCTCCCAGAGTGAAATATTTCTATGGTAACCATTAAG CAATGAAAAAGCCAAGTCCTTAGCAGAGAATTAGCATCACCTGGATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGCTCTGATTATATTGCAGATTATTTGAACTCCAGAAGGACCAACACCAGATAAATTA TGAATGTTGAACAAGATGACCTTACATCCACAGCAGATAATGATAGGTCCTAGGTTTAAC AGGGCCTTATTTGACCCCCTGCTTGTGGTGCTGCTGGCTCTTCAACTTCTTGTGGTGGCT GGTCTGGTGCGGGCTCAAACCTGCCCTTCCGTCTGTTCCTGCAGCAACCAGTTCAGTAAG GTGATTTGTGTTCGGAAAAACCTACGGGAGGTTCCAGACGGCATCTCCACCAACACTCGG CTGCTGAACCTCCATGAGAACCAAATCCAGATCATCAAAGTGAACAGCTTCAAACACTTG AGGCACCTGGAAATCACATGACACTCCAGGCTGGACCTCACACCAGGGTTTCATGATCTC CAGGTTTGAAAAACCAATCATTGCTGGCAAAATAGGTCAGAGAGCTTCTATTCTTTCTCT TCTGCCACAAGGAGAAATATGAACTCCTACAAACTCTCTATTAGATAGAAACCAGCTGTA ATGCCATTTTTTTTCCAGGATATAAAATAAGATACATCCGACTCTGTTGAAGTGGTCTCC TCTTTTTCTTCTGGAGTAGGATATCTTTTTTAAGGTTTCCGGTCCATTTGGGTGAAGATT GCTCAGGCTTTAGTTGTGAATTTTGTTGTTTTTAGGAGAGAAGTTGCGTTCCAGTCCTTC TACGCCGCCATCTTAATCCCATCTCTCCCAGAGTGAAATATTTCTATGGTAACCATTAAG CAATGAAAAAGCCAAGTCCTTAGCAGAGAATTAGCATCACCTGGATCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-239, - strand, RNAz p=0.958623 | |
| 257-375, - strand, RNAz p=0.544349 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-239, - strand, RNAz p=0.958623 | |
| 257-375, - strand, RNAz p=0.544349 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-375, gnl|bosTau2|chr15 (43872660-43873034) | |
| 1-375, gnl|canFam2|chr18 (31861979-31861297) | |
| 1-375, gnl|danRer3|chr23 (23828672-23827987) | |
| 1-375, gnl|dasNov1|scaffold_4221 (18107-18788) | |
| 1-375, gnl|echTel1|scaffold_316934 (110762-110079) | |
| 1-375, gnl|fr1|chrUn (82032538-82033223) | |
| 1-375, gnl|galGal2|chr5 (17665271-17665953) | |
| 1-375, gnl|hg17|chr11 (40093761-40094443) | |
| 1-375, gnl|Hg17|chr11 (40094478-40094107) | |
| 1-375, gnl|loxAfr1|scaffold_1529 (113264-112582) | |
| 1-375, gnl|mm7|chr2 (97480406-97479724) | |
| 1-375, gnl|Mm7|chr2 (97479685-97480058) | |
| 1-375, gnl|monDom2|scaffold_33 (5638543-5639225) | |
| 1-375, gnl|oryCun1|scaffold_175125 (12680-13362) | |
| 1-375, gnl|panTro1|chr9 (40579550-40580232) | |
| 1-375, gnl|rheMac2|chr14 (31856776-31856094) | |
| 1-375, gnl|rn3|chr3 (82308134-82307452) | |
| 1-375, gnl|tetNig1|chr13 (5285723-5286408) | |
| 1-375, gnl|xenTro1|scaffold_37 (978808-978126) | |
| 465-585, gnl|bosTau2|chr15 (43878541-43878662) | |
| 465-585, gnl|canFam2|chr18 (31867584-31867313) | |
| 465-585, gnl|dasNov1|scaffold_4221 (12745-13020) | |
| 465-585, gnl|echTel1|scaffold_316934 (116434-116153) | |
| 465-585, gnl|hg17|chr11 (40088305-40088582) | |
| 465-585, gnl|Hg17|chr11 (40088537-40088403) | |
| 465-585, gnl|loxAfr1|scaffold_1529 (119615-119341) | |
| 465-585, gnl|mm7|chr2 (97485861-97485586) | |
| 465-585, gnl|Mm7|chr2 (97485640-97485761) | |
| 465-585, gnl|monDom2|scaffold_33 (5631967-5632241) | |
| 465-585, gnl|oryCun1|scaffold_175125 (7297-7563) | |
| 465-585, gnl|panTro1|chr9 (40574111-40574388) | |
| 465-585, gnl|rheMac2|chr14 (31862569-31862292) | |
| 465-585, gnl|rn3|chr3 (82313450-82313171) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-375, gnl|bosTau2|chr15 (43872660-43873034) | |
| 1-375, gnl|canFam2|chr18 (31861979-31861297) | |
| 1-375, gnl|danRer3|chr23 (23828672-23827987) | |
| 1-375, gnl|dasNov1|scaffold_4221 (18107-18788) | |
| 1-375, gnl|echTel1|scaffold_316934 (110762-110079) | |
| 1-375, gnl|fr1|chrUn (82032538-82033223) | |
| 1-375, gnl|galGal2|chr5 (17665271-17665953) | |
| 1-375, gnl|hg17|chr11 (40093761-40094443) | |
| 1-375, gnl|Hg17|chr11 (40094478-40094107) | |
| 1-375, gnl|loxAfr1|scaffold_1529 (113264-112582) | |
| 1-375, gnl|mm7|chr2 (97480406-97479724) | |
| 1-375, gnl|Mm7|chr2 (97479685-97480058) | |
| 1-375, gnl|monDom2|scaffold_33 (5638543-5639225) | |
| 1-375, gnl|oryCun1|scaffold_175125 (12680-13362) | |
| 1-375, gnl|panTro1|chr9 (40579550-40580232) | |
| 1-375, gnl|rheMac2|chr14 (31856776-31856094) | |
| 1-375, gnl|rn3|chr3 (82308134-82307452) | |
| 1-375, gnl|tetNig1|chr13 (5285723-5286408) | |
| 1-375, gnl|xenTro1|scaffold_37 (978808-978126) | |
| 465-585, gnl|bosTau2|chr15 (43878541-43878662) | |
| 465-585, gnl|canFam2|chr18 (31867584-31867313) | |
| 465-585, gnl|dasNov1|scaffold_4221 (12745-13020) | |
| 465-585, gnl|echTel1|scaffold_316934 (116434-116153) | |
| 465-585, gnl|hg17|chr11 (40088305-40088582) | |
| 465-585, gnl|Hg17|chr11 (40088537-40088403) | |
| 465-585, gnl|loxAfr1|scaffold_1529 (119615-119341) | |
| 465-585, gnl|mm7|chr2 (97485861-97485586) | |
| 465-585, gnl|Mm7|chr2 (97485640-97485761) | |
| 465-585, gnl|monDom2|scaffold_33 (5631967-5632241) | |
| 465-585, gnl|oryCun1|scaffold_175125 (7297-7563) | |
| 465-585, gnl|panTro1|chr9 (40574111-40574388) | |
| 465-585, gnl|rheMac2|chr14 (31862569-31862292) | |
| 465-585, gnl|rn3|chr3 (82313450-82313171) |