Non-Coding RNA Search

Ss1.1-Pig4-TMW8044J05.3

Sequence:


               
               TTTTCCTTTGGGATGGAGATGGTAGGCGTTCCTGCTGTTTTCAGCCACGGTTTACCGCCA
GGCTTGTCTGCTGGACACCTCCTGGGTCTTCTCTTTGGACCTTGAAACTTGAGAGGGTCT
GCATGCCTGAATCTGAATGGTGGTCCCTGAGGCCCCTCCCTTTGACCCCTGGAGCCTGGA
GATGGGGTGGGGGAAGGGAGGAGAAGGCAGCCCCGCCGGTCAGGTTTATCGGGCTCCTTT
TGACCCACACCCCCCCAGGTGTAAAATGAACATTTTTCTCCCTAATCTAGTTTCTAAAGC
AAAGTGACAATATCGACACGTGCTCCAGCAAACTAGTCAGAAGGTTCTTTCCACCTCTCA
AATGATACGCCCTCCTGACTTCCTCTGATCGTATCTGTAATATTCAGCAGATCTGTGTGG
TCCCATTAGACTAAGCAACTAAGATCCAGAGAAGCTAGGCGCTTACTCAGAGTCTTGTCA
TCAGCTGTGATCCTTTGCTCACATCCTGCTCCTTCTGTCCTTTTTCCTGGCAAGGGGCAG
GTGAGGTCTGGGAACCTGCAGCACTGCCACCGCCACCCCTGCTTCCTGCCCAGACCCCCG
CTCTCTGCTCTCAGGTGGAGCAGCGCATGCCCGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCTTTGGGATGGAGATGGTAGGCGTTCCTGCTGTTTTCAGCCACGGTTTACCGCCA
GGCTTGTCTGCTGGACACCTCCTGGGTCTTCTCTTTGGACCTTGAAACTTGAGAGGGTCT
GCATGCCTGAATCTGAATGGTGGTCCCTGAGGCCCCTCCCTTTGACCCCTGGAGCCTGGA
GATGGGGTGGGGGAAGGGAGGAGAAGGCAGCCCCGCCGGTCAGGTTTATCGGGCTCCTTT
TGACCCACACCCCCCCAGGTGTAAAATGAACATTTTTCTCCCTAATCTAGTTTCTAAAGC
AAAGTGACAATATCGACACGTGCTCCAGCAAACTAGTCAGAAGGTTCTTTCCACCTCTCA
AATGATACGCCCTCCTGACTTCCTCTGATCGTATCTGTAATATTCAGCAGATCTGTGTGG
TCCCATTAGACTAAGCAACTAAGATCCAGAGAAGCTAGGCGCTTACTCAGAGTCTTGTCA
TCAGCTGTGATCCTTTGCTCACATCCTGCTCCTTCTGTCCTTTTTCCTGGCAAGGGGCAG
GTGAGGTCTGGGAACCTGCAGCACTGCCACCGCCACCCCTGCTTCCTGCCCAGACCCCCG
CTCTCTGCTCTCAGGTGGAGCAGCGCATGCCCGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-120, + strand, RNAz p=0.517041

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.517041

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               60-235, + strand, RNAmicro p=0.997583

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               60-235, + strand, RNAmicro p=0.997583

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-636, gnl|bosTau2|chr11 (53982181-53981556)
               

               
               2-636, gnl|Hg17|chr2 (25394431-25393763)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-636, gnl|bosTau2|chr11 (53982181-53981556)
               

               
               2-636, gnl|Hg17|chr2 (25394431-25393763)

	2-636, gnl\|bosTau2\|chr11 (53982181-53981556)
	2-636, gnl\|Hg17\|chr2 (25394431-25393763)