Ss1.1-Pig4-TMW8044J09.3
|
GCAGCACCTCATCACTTAGGCAAAGAGGAAAATCCATAAAAGAGATGGAAAATTACATTT
CTCTCTTTTTTTTTAAATTTTGTGCTACTTTAAGAAGGTTGAGGAGAGGGGGTGGCTCCA
GTCCTTCTCAATTTCTCAGAGATTTTTTTACTTTAAAACTGTCCAATTATGGACCATTCT
TTTGGTAAATTGTTAATCAGTCCAGGTCTGGTAAATTTTTAATCAGTCCAGGTCATCCAC
TAAGATGCATCAGACCCAAGTTTTGAATCTCAAGTAACTTTTCTGTGCTCCTGGACAAAG
TGACTTAACTCTGTGCAAACACTTTGAATCATTGGCTTTTTATTGCCCCTCAATTCTTAA
GACTAGTCATTGTTCAAACATCTTCACAAATCTGGATCAGGATGTTGACAATCTATGGTT
ATTTTCAGATCAAGAGTAACTATTACACTCTTGAAAGCACTTAAAAAGAAAATAGAAGCA
TGTCCATTTGACTTTGAAAAAAGTTTGCTTTTCTGAATATTATACCAATCTGTAGATGTA
ATTTTAAAGGATTTAAGCAACAATGAAGACAGTTTGAGAAATGAGAAGGCACTTTAAAGA
CATGAAACCTTACATTATATGCTCTTGGATATTTTTTAATGTAATAAGCTAATTGGATTC
AGGTATTTTTTTTCCCTTTAAATTTTTAAAAATATTTCTAATTTGTTTGCATATTTAATT
TTGTCAAAGCTGAGAATTGCTTGTTAGTCGAATATGTAAATGTCATTCGCAAACCAAATG
AAGTATTTATTTTTAAAAAGAAAGGGTGAAGGAACCAATATTGATTTGTACATAATGAAA
ATATGTGTGTGTGTGTATATATTTTCTTCCTTGACACTACTTTGTCCCCACATCAAGTGT
ATTTTTGTATATAATATATATTGGTTAGAAAGTGTAGATTGTCTATTCAAAGAATTCTAT
CTCTATGATAGATTGTATTTATCCTAATCTGTTGATACTTCTGTTAACTTAAGAGATAGA
ACTCTATTTTTTTGGAATTTGCAGAGAACTGCATTCATAGCTTCCAGTTGTAAATATGCT
AAGGGTATTTTGATAAATCTTGGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGCACCTCATCACTTAGGCAAAGAGGAAAATCCATAAAAGAGATGGAAAATTACATTT
CTCTCTTTTTTTTTAAATTTTGTGCTACTTTAAGAAGGTTGAGGAGAGGGGGTGGCTCCA
GTCCTTCTCAATTTCTCAGAGATTTTTTTACTTTAAAACTGTCCAATTATGGACCATTCT
TTTGGTAAATTGTTAATCAGTCCAGGTCTGGTAAATTTTTAATCAGTCCAGGTCATCCAC
TAAGATGCATCAGACCCAAGTTTTGAATCTCAAGTAACTTTTCTGTGCTCCTGGACAAAG
TGACTTAACTCTGTGCAAACACTTTGAATCATTGGCTTTTTATTGCCCCTCAATTCTTAA
GACTAGTCATTGTTCAAACATCTTCACAAATCTGGATCAGGATGTTGACAATCTATGGTT
ATTTTCAGATCAAGAGTAACTATTACACTCTTGAAAGCACTTAAAAAGAAAATAGAAGCA
TGTCCATTTGACTTTGAAAAAAGTTTGCTTTTCTGAATATTATACCAATCTGTAGATGTA
ATTTTAAAGGATTTAAGCAACAATGAAGACAGTTTGAGAAATGAGAAGGCACTTTAAAGA
CATGAAACCTTACATTATATGCTCTTGGATATTTTTTAATGTAATAAGCTAATTGGATTC
AGGTATTTTTTTTCCCTTTAAATTTTTAAAAATATTTCTAATTTGTTTGCATATTTAATT
TTGTCAAAGCTGAGAATTGCTTGTTAGTCGAATATGTAAATGTCATTCGCAAACCAAATG
AAGTATTTATTTTTAAAAAGAAAGGGTGAAGGAACCAATATTGATTTGTACATAATGAAA
ATATGTGTGTGTGTGTATATATTTTCTTCCTTGACACTACTTTGTCCCCACATCAAGTGT
ATTTTTGTATATAATATATATTGGTTAGAAAGTGTAGATTGTCTATTCAAAGAATTCTAT
CTCTATGATAGATTGTATTTATCCTAATCTGTTGATACTTCTGTTAACTTAAGAGATAGA
ACTCTATTTTTTTGGAATTTGCAGAGAACTGCATTCATAGCTTCCAGTTGTAAATATGCT
AAGGGTATTTTGATAAATCTTGGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
938-1007, DB303475 BRAMY3 Homo sapiens cDNA clone BRAMY3018092 3', mRNA
(dbj|DB303475.1|), blast E-value=1e-20, identity=94.29% |
|
938-1007, wr76b10.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGE
(gb|AI985712.1|), blast E-value=1e-20, identity=94.29% |
|
938-1007, ht48h01.x1 NCI_CGAP_Mel15 Homo sapiens cDNA clone IMAGE
(gb|BE349075.1|), blast E-value=1e-20, identity=94.29% |
|
938-1007, UI-E-CK0-aau-a-12-0-UI.s1 UI-E-CK0 Homo sapiens cDNA clone
(gb|BM663620.1|), blast E-value=1e-20, identity=94.29% |
|
938-1007, hq04a04.y1 Human Trabecular meshwork cDNA (gb|CD679058.1|), blast
E-value=1e-20, identity=94.29% |
|
916-1007, LIB4006-027-Q1-K1-E2 LIB4006 Canis familiaris cDNA clone
(gb|DN407624.1|), blast E-value=2e-31, identity=94.57% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
938-1007, DB303475 BRAMY3 Homo sapiens cDNA clone BRAMY3018092 3', mRNA
(dbj|DB303475.1|), blast E-value=1e-20, identity=94.29% |
|
938-1007, wr76b10.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGE
(gb|AI985712.1|), blast E-value=1e-20, identity=94.29% |
|
938-1007, ht48h01.x1 NCI_CGAP_Mel15 Homo sapiens cDNA clone IMAGE
(gb|BE349075.1|), blast E-value=1e-20, identity=94.29% |
|
938-1007, UI-E-CK0-aau-a-12-0-UI.s1 UI-E-CK0 Homo sapiens cDNA clone
(gb|BM663620.1|), blast E-value=1e-20, identity=94.29% |
|
938-1007, hq04a04.y1 Human Trabecular meshwork cDNA (gb|CD679058.1|), blast
E-value=1e-20, identity=94.29% |
|
916-1007, LIB4006-027-Q1-K1-E2 LIB4006 Canis familiaris cDNA clone
(gb|DN407624.1|), blast E-value=2e-31, identity=94.57% |
|
1-208, gnl|bosTau2|chr10 (20402687-20402485) |
|
1-208, gnl|canFam2|chr30 (5181932-5181609) |
|
1-208, gnl|dasNov1|scaffold_1868 (124973-125296) |
|
1-208, gnl|echTel1|scaffold_325232 (57309-57656) |
|
1-208, gnl|hg17|chr12 (79265746-79266088) |
|
1-208, gnl|Hg17|chr15 (30846126-30845933) |
|
1-208, gnl|loxAfr1|scaffold_7713 (6662-6327) |
|
1-208, gnl|mm7|chr2 (113566290-113566001) |
|
1-208, gnl|Mm7|chr2 (113565957-113566131) |
|
1-208, gnl|oryCun1|scaffold_215186 (14715-14401) |
|
1-208, gnl|panTro1|chr10 (80885712-80886055) |
|
1-208, gnl|rheMac2|chr11 (77329710-77330049) |
|
1-208, gnl|rn3|chr3 (99466677-99466383) |
| |
|
209-1104, gnl|bosTau2|chr10 (20402511-20401602) |
|
209-1104, gnl|Hg17|chr15 (30845959-30845047) |
|
209-1104, gnl|Mm7|chr2 (113566113-113566996) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-208, gnl|bosTau2|chr10 (20402687-20402485) |
|
1-208, gnl|canFam2|chr30 (5181932-5181609) |
|
1-208, gnl|dasNov1|scaffold_1868 (124973-125296) |
|
1-208, gnl|echTel1|scaffold_325232 (57309-57656) |
|
1-208, gnl|hg17|chr12 (79265746-79266088) |
|
1-208, gnl|Hg17|chr15 (30846126-30845933) |
|
1-208, gnl|loxAfr1|scaffold_7713 (6662-6327) |
|
1-208, gnl|mm7|chr2 (113566290-113566001) |
|
1-208, gnl|Mm7|chr2 (113565957-113566131) |
|
1-208, gnl|oryCun1|scaffold_215186 (14715-14401) |
|
1-208, gnl|panTro1|chr10 (80885712-80886055) |
|
1-208, gnl|rheMac2|chr11 (77329710-77330049) |
|
1-208, gnl|rn3|chr3 (99466677-99466383) |
| |
|
209-1104, gnl|bosTau2|chr10 (20402511-20401602) |
|
209-1104, gnl|Hg17|chr15 (30845959-30845047) |
|
209-1104, gnl|Mm7|chr2 (113566113-113566996) |
