Non-Coding RNA Search

Ss1.1-Pig4-TMW8044K18.3

Sequence:


               
               GCCTTTCTGACGTCCGGGAGAGAGTGGACTGTTTCTCCATGTGTTCTCCATGAACTTACC
TCTTCACCCCGTTCCTCTTCAAACGAATTCAGAGAAGGGTGGGAATATCCCTACTTTACT
TCTCTCTCAGTGAGGGTGGCTTGCCAGCTCCGCACGGCAGTGGGAAAGGGTTAAGACAGA
ACCCAGAGTCAGTTCCCAGCGGCTCCTTTAGGACCGGAAAGCTGAAAGCATTTAAGGCTT
GAAAAGGTCACCTCCCTTCCAAGGGGTAGAGGTCTGATCCCACGCATCACGTGGGCTTCG
GCGTAGCGCTCATCTCGTTCACTGGTGGGGACAGAGGTTTTTGGACCAAATGTTAGCCCA
AGCTGAGACTTACTCCGCTGCATCTCCTGGAAGGAGTGGAAAGTGGCCATCTTGGTAATA
AATAGAGAACAGCATCTAATTTGTGAATTCCTTTTTCCATTGCTGAGTCTAATCAGATCA
GTGGGACTGAAGGCAATTGTTAGTGACCAAAAATTATTTTCCATACCTTTATCTGGCCAG
GAAGCATTACCTCTAATGGAAGCGACGTGCCTCTCTGGCAGTGGTCAGGGATGACATTTG
TCATCAGACTAACCCAATTGTTGCATATTAAAAAATATGTTTAGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTCTGACGTCCGGGAGAGAGTGGACTGTTTCTCCATGTGTTCTCCATGAACTTACC
TCTTCACCCCGTTCCTCTTCAAACGAATTCAGAGAAGGGTGGGAATATCCCTACTTTACT
TCTCTCTCAGTGAGGGTGGCTTGCCAGCTCCGCACGGCAGTGGGAAAGGGTTAAGACAGA
ACCCAGAGTCAGTTCCCAGCGGCTCCTTTAGGACCGGAAAGCTGAAAGCATTTAAGGCTT
GAAAAGGTCACCTCCCTTCCAAGGGGTAGAGGTCTGATCCCACGCATCACGTGGGCTTCG
GCGTAGCGCTCATCTCGTTCACTGGTGGGGACAGAGGTTTTTGGACCAAATGTTAGCCCA
AGCTGAGACTTACTCCGCTGCATCTCCTGGAAGGAGTGGAAAGTGGCCATCTTGGTAATA
AATAGAGAACAGCATCTAATTTGTGAATTCCTTTTTCCATTGCTGAGTCTAATCAGATCA
GTGGGACTGAAGGCAATTGTTAGTGACCAAAAATTATTTTCCATACCTTTATCTGGCCAG
GAAGCATTACCTCTAATGGAAGCGACGTGCCTCTCTGGCAGTGGTCAGGGATGACATTTG
TCATCAGACTAACCCAATTGTTGCATATTAAAAAATATGTTTAGCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               500-648, - strand, RNAz p=0.97414

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               500-648, - strand, RNAz p=0.97414

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-648, gnl|bosTau2|chr5 (66085899-66086553)
               

               
               3-648, gnl|Hg17|chr12 (2509132-2509788)
               

               
               3-648, gnl|Mm7|chr6 (118751357-118750746)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-648, gnl|bosTau2|chr5 (66085899-66086553)
               

               
               3-648, gnl|Hg17|chr12 (2509132-2509788)
               

               
               3-648, gnl|Mm7|chr6 (118751357-118750746)

	3-648, gnl\|bosTau2\|chr5 (66085899-66086553)
	3-648, gnl\|Hg17\|chr12 (2509132-2509788)
	3-648, gnl\|Mm7\|chr6 (118751357-118750746)