Ss1.1-Pig4-TMW8044L23.5
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CACATTAATGACACAGATGCTGTACCAGGTACCAATGATAGCAACCCTGTGATTTGTCCA
AGTGCCAGTAGTAGTAACCATCCTGACAATGGCTCTATGATTTTCTACGCCAATGACACG
GGACTCCAACAGTTTGAAAAGTGGTGGAATAAGTCCAAGACAGTGCCCTTTTACCTTATA
GGGCTCCTCCTGCCACTGCTCAATTTCAAATCTCCTTCATTTTTTTCAAAATTTAATATC
CTAGGCACAGTGTCCGTTCTCTATTTGATTTTTCTTGTCACCTTCAAGGCTTTTCACTTG
GGATTTCATTTGGAGTTTCATTGGTTTTTGCCAACAGAATTTTTTGTCCCAGAGATAAGA
TTTCAGTTTCCACAGCTGACTGGAGTGCTTACCCTTGCTTTCTTTATTCATAATTGTATT
ATCACACTCTTGAAGAACAATAAGAATCAAGAGAACAATGTGAGAGACTTGTCCATTGCT
TATATGCTGGTGACATTAACCTATCTCTATATTGGAGTCCTGGTTTTTGCCTCATTTCCT
TCACCACCTTTATCCAAAGATTGTATAGAGCAGAATTTTTTAGACAACTTCCCTAGCAGT
GACATCCTGTCCTTCATTGCAAGGATATTCCTGCTGTTCCAGATGATGACTGTGTACCCA
CTCCTAGGCTACTTGGCTCGTGTCCAGCTATTGGGCCATATCTTCGGTGACATTTATCCT
AGGTAAGGGCTCTTCTCTTGACCAGCAAGATGTGCCAAGCAACAAATGACTGTGCAAACA
GGTCAGTTTAAAATGTGACTGATCCTTTTGCTATAAAAATTTGCCTAATGAAAAGAGTTA
CTAAGGATAGATCATTGGTGTTCTTTTCCCAGAAGAGCTTTAAAAATAGAAGCCACTCCC
TTGTCCAGAATGGTTTAAAGTTAGTTCCTTCCAGTATAGTTATCTTAGCTCTGATACCAG
TTATATTTATCTTATGATTGAGCTGCTATTAATCTACTCTTTGCCAATAAGTTAATAGTG
TATAATGCCTGTGTTAGCCATGTATGGCTAATGAGAAGTAACTATTTTAATATTGGTTAT
------------------------------------------------------------
------------------------------------AAAAAAATGTATACATATAAGTGT
AACTTGGTCCCCATGCTGTACACCGGGGAAAAAAAAATAAACTAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACATTAATGACACAGATGCTGTACCAGGTACCAATGATAGCAACCCTGTGATTTGTCCA
AGTGCCAGTAGTAGTAACCATCCTGACAATGGCTCTATGATTTTCTACGCCAATGACACG
GGACTCCAACAGTTTGAAAAGTGGTGGAATAAGTCCAAGACAGTGCCCTTTTACCTTATA
GGGCTCCTCCTGCCACTGCTCAATTTCAAATCTCCTTCATTTTTTTCAAAATTTAATATC
CTAGGCACAGTGTCCGTTCTCTATTTGATTTTTCTTGTCACCTTCAAGGCTTTTCACTTG
GGATTTCATTTGGAGTTTCATTGGTTTTTGCCAACAGAATTTTTTGTCCCAGAGATAAGA
TTTCAGTTTCCACAGCTGACTGGAGTGCTTACCCTTGCTTTCTTTATTCATAATTGTATT
ATCACACTCTTGAAGAACAATAAGAATCAAGAGAACAATGTGAGAGACTTGTCCATTGCT
TATATGCTGGTGACATTAACCTATCTCTATATTGGAGTCCTGGTTTTTGCCTCATTTCCT
TCACCACCTTTATCCAAAGATTGTATAGAGCAGAATTTTTTAGACAACTTCCCTAGCAGT
GACATCCTGTCCTTCATTGCAAGGATATTCCTGCTGTTCCAGATGATGACTGTGTACCCA
CTCCTAGGCTACTTGGCTCGTGTCCAGCTATTGGGCCATATCTTCGGTGACATTTATCCT
AGGTAAGGGCTCTTCTCTTGACCAGCAAGATGTGCCAAGCAACAAATGACTGTGCAAACA
GGTCAGTTTAAAATGTGACTGATCCTTTTGCTATAAAAATTTGCCTAATGAAAAGAGTTA
CTAAGGATAGATCATTGGTGTTCTTTTCCCAGAAGAGCTTTAAAAATAGAAGCCACTCCC
TTGTCCAGAATGGTTTAAAGTTAGTTCCTTCCAGTATAGTTATCTTAGCTCTGATACCAG
TTATATTTATCTTATGATTGAGCTGCTATTAATCTACTCTTTGCCAATAAGTTAATAGTG
TATAATGCCTGTGTTAGCCATGTATGGCTAATGAGAAGTAACTATTTTAATATTGGTTAT
------------------------------------------------------------
------------------------------------AAAAAAATGTATACATATAAGTGT
AACTTGGTCCCCATGCTGTACACCGGGGAAAAAAAAATAAACTAAAAA
|
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gi|47187911|emb|CAF91818.1| |
Protein identifier
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gi|47187911|emb|CAF91818.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
49-245, gnl|bosTau2|chr20 (13617627-13617823) |
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49-245, gnl|canFam2|chr2 (45811646-45811873) |
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49-245, gnl|danRer3|chrNA (145978705-145978488) |
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49-245, gnl|dasNov1|scaffold_19274 (47121-47350) |
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49-245, gnl|echTel1|scaffold_304071 (3417-3190) |
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49-245, gnl|galGal2|chrZ (372174-372415) |
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49-245, gnl|hg17|chr5 (54984100-54984326) |
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49-245, gnl|Hg17|chr5 (54984309-54984113) |
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49-245, gnl|loxAfr1|scaffold_634 (97775-97546) |
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49-245, gnl|mm7|chr13 (109857560-109857336) |
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49-245, gnl|Mm7|chr13 (109857354-109857550) |
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49-245, gnl|monDom2|scaffold_27 (18127546-18127779) |
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49-245, gnl|oryCun1|scaffold_212874 (181417-181643) |
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49-245, gnl|panTro1|chr4 (61218220-61217994) |
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49-245, gnl|rheMac2|chr6 (53319595-53319821) |
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49-245, gnl|rn3|chr2 (44010939-44010718) |
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49-245, gnl|xenTro1|scaffold_863 (463908-464133) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
49-245, gnl|bosTau2|chr20 (13617627-13617823) |
|
49-245, gnl|canFam2|chr2 (45811646-45811873) |
|
49-245, gnl|danRer3|chrNA (145978705-145978488) |
|
49-245, gnl|dasNov1|scaffold_19274 (47121-47350) |
|
49-245, gnl|echTel1|scaffold_304071 (3417-3190) |
|
49-245, gnl|galGal2|chrZ (372174-372415) |
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49-245, gnl|hg17|chr5 (54984100-54984326) |
|
49-245, gnl|Hg17|chr5 (54984309-54984113) |
|
49-245, gnl|loxAfr1|scaffold_634 (97775-97546) |
|
49-245, gnl|mm7|chr13 (109857560-109857336) |
|
49-245, gnl|Mm7|chr13 (109857354-109857550) |
|
49-245, gnl|monDom2|scaffold_27 (18127546-18127779) |
|
49-245, gnl|oryCun1|scaffold_212874 (181417-181643) |
|
49-245, gnl|panTro1|chr4 (61218220-61217994) |
|
49-245, gnl|rheMac2|chr6 (53319595-53319821) |
|
49-245, gnl|rn3|chr2 (44010939-44010718) |
|
49-245, gnl|xenTro1|scaffold_863 (463908-464133) |
