Ss1.1-Pig4-TMW8044N08.5
|
GGGGGGGAACCTTTCCTGGAGTGGGAGAAGCACCGAGATGGGTGATGTGTCCCTGCGTCT
TTCCTTCCTTCTCTCTCTTTCACTCTCTGCCAACTGCTATGGGTTTCCATAACTCCGCAA
TCAAAGTGGATGGTCGGGAAGGATTATTACAAAGATTGAAGCCTCCGCTGTTAATGTCTC
CAGTGTTTAATCATCATACAGTAGAATGGTTTTATGCATATTTCATTTGCATATCATTAA
ACCGTGTTAGCGAGGGGCATTCAGAGCCAGGAGAAGTACAAAGTTGGGGAGAGAGGGAAG
AAAAAAAGGTCCCTATGATGCTTAGGAATTTTGTTTTTAATTACAATGTATCTACTTTCT
TAGAAATTTTTCACTAGAAATAACTCATCTGAATCAAGAGGACTAGCAACAAAACATAAC
AATGATATAGAGAAAGGAACTTTACGGAACTTTTTCCTTAAAAAAATAAAAACTCCTTTG
CCCGTGATATTTAGGAAAGTGGTAACCTTCTTCTTCATAACTTTTTTCCTTTAAACTTGA
TTCTGCCGCAATGGAGCCAGCACAGCGGATGCTTTCACACCCAGCAAGACAAAGGCCGTC
GTCTCCGCCATGACACTGTTCTGTTCCAAGCAGAGGCCGGGATCCTGGACTCGTTGTCTG
CGTTGCTGTGGATCCTGAAAGGTGTTCTGTTGGCACCGGGCGCTGAGCCAGGGGCAGGCG
CTTTTTGTATGTGTTTGTTTTTGTCCTTTCTTTTTGAAGAGGGATGTTGTCACTTTTGAA
GCGATTAGTCAATTATTCTGTAGCTCTGATCTTTTCCTTCTGCACCCGACAGGAAAGAAA
GGTGGTGGTTAGGGAATATGTGTGTACTGGGGGGAATCTTATTTCATCGGTGAGTACATC
AGCACAGTGTCGAAGAGAAGCGGTGAATGGTGAGAATAAACATTCTTGCTTTGCTTCCAA
ACTCAGCAGACATCATTGCTTTGTTCTCTATCTGAGCTTCAGGTTCCTCATCTATAAAAT
GGGAATACCACCTCGTCCGCCCTTTTCACCTTTCTCCCTCCAGGGTCG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGGGGGAACCTTTCCTGGAGTGGGAGAAGCACCGAGATGGGTGATGTGTCCCTGCGTCT
TTCCTTCCTTCTCTCTCTTTCACTCTCTGCCAACTGCTATGGGTTTCCATAACTCCGCAA
TCAAAGTGGATGGTCGGGAAGGATTATTACAAAGATTGAAGCCTCCGCTGTTAATGTCTC
CAGTGTTTAATCATCATACAGTAGAATGGTTTTATGCATATTTCATTTGCATATCATTAA
ACCGTGTTAGCGAGGGGCATTCAGAGCCAGGAGAAGTACAAAGTTGGGGAGAGAGGGAAG
AAAAAAAGGTCCCTATGATGCTTAGGAATTTTGTTTTTAATTACAATGTATCTACTTTCT
TAGAAATTTTTCACTAGAAATAACTCATCTGAATCAAGAGGACTAGCAACAAAACATAAC
AATGATATAGAGAAAGGAACTTTACGGAACTTTTTCCTTAAAAAAATAAAAACTCCTTTG
CCCGTGATATTTAGGAAAGTGGTAACCTTCTTCTTCATAACTTTTTTCCTTTAAACTTGA
TTCTGCCGCAATGGAGCCAGCACAGCGGATGCTTTCACACCCAGCAAGACAAAGGCCGTC
GTCTCCGCCATGACACTGTTCTGTTCCAAGCAGAGGCCGGGATCCTGGACTCGTTGTCTG
CGTTGCTGTGGATCCTGAAAGGTGTTCTGTTGGCACCGGGCGCTGAGCCAGGGGCAGGCG
CTTTTTGTATGTGTTTGTTTTTGTCCTTTCTTTTTGAAGAGGGATGTTGTCACTTTTGAA
GCGATTAGTCAATTATTCTGTAGCTCTGATCTTTTCCTTCTGCACCCGACAGGAAAGAAA
GGTGGTGGTTAGGGAATATGTGTGTACTGGGGGGAATCTTATTTCATCGGTGAGTACATC
AGCACAGTGTCGAAGAGAAGCGGTGAATGGTGAGAATAAACATTCTTGCTTTGCTTCCAA
ACTCAGCAGACATCATTGCTTTGTTCTCTATCTGAGCTTCAGGTTCCTCATCTATAAAAT
GGGAATACCACCTCGTCCGCCCTTTTCACCTTTCTCCCTCCAGGGTCG
|
|
gi|12851169|dbj|BAB28961.1| |
Protein identifier
|
gi|12851169|dbj|BAB28961.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-324, gnl|bosTau2|chr18 (34028400-34028076) |
|
1-324, gnl|Hg17|chr16 (71019237-71019559) |
|
1-324, gnl|Mm7|chr8 (107849579-107849252) |
| |
|
326-523, gnl|bosTau2|chr18 (34030443-34030247) |
|
326-523, gnl|canFam2|chr5 (81161858-81162131) |
|
326-523, gnl|dasNov1|scaffold_74075 (1273-1548) |
|
326-523, gnl|echTel1|scaffold_293253 (6955-6698) |
|
326-523, gnl|galGal2|chr11_random (838674-838447) |
|
326-523, gnl|hg17|chr16 (71016405-71016679) |
|
326-523, gnl|Hg17|chr16 (71016533-71016734) |
|
326-523, gnl|loxAfr1|scaffold_24594 (10390-10663) |
|
326-523, gnl|mm7|chr8 (107852460-107852197) |
|
326-523, gnl|Mm7|chr8 (107852323-107852136) |
|
326-523, gnl|monDom2|scaffold_23 (2076915-2077232) |
|
326-523, gnl|oryCun1|scaffold_210420 (48440-48157) |
|
326-523, gnl|panTro1|chr18 (65387048-65387320) |
|
326-523, gnl|rheMac2|chr20 (70203314-70203024) |
|
326-523, gnl|rn3|chr19 (39117149-39116889) |
|
326-523, gnl|xenTro1|scaffold_13 (3792572-3792832) |
| |
|
721-875, gnl|bosTau2|chr18 (34027684-34027531) |
|
721-875, gnl|Hg17|chr16 (71019955-71020116) |
|
721-875, gnl|Mm7|chr8 (107848854-107848695) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-324, gnl|bosTau2|chr18 (34028400-34028076) |
|
1-324, gnl|Hg17|chr16 (71019237-71019559) |
|
1-324, gnl|Mm7|chr8 (107849579-107849252) |
| |
|
326-523, gnl|bosTau2|chr18 (34030443-34030247) |
|
326-523, gnl|canFam2|chr5 (81161858-81162131) |
|
326-523, gnl|dasNov1|scaffold_74075 (1273-1548) |
|
326-523, gnl|echTel1|scaffold_293253 (6955-6698) |
|
326-523, gnl|galGal2|chr11_random (838674-838447) |
|
326-523, gnl|hg17|chr16 (71016405-71016679) |
|
326-523, gnl|Hg17|chr16 (71016533-71016734) |
|
326-523, gnl|loxAfr1|scaffold_24594 (10390-10663) |
|
326-523, gnl|mm7|chr8 (107852460-107852197) |
|
326-523, gnl|Mm7|chr8 (107852323-107852136) |
|
326-523, gnl|monDom2|scaffold_23 (2076915-2077232) |
|
326-523, gnl|oryCun1|scaffold_210420 (48440-48157) |
|
326-523, gnl|panTro1|chr18 (65387048-65387320) |
|
326-523, gnl|rheMac2|chr20 (70203314-70203024) |
|
326-523, gnl|rn3|chr19 (39117149-39116889) |
|
326-523, gnl|xenTro1|scaffold_13 (3792572-3792832) |
| |
|
721-875, gnl|bosTau2|chr18 (34027684-34027531) |
|
721-875, gnl|Hg17|chr16 (71019955-71020116) |
|
721-875, gnl|Mm7|chr8 (107848854-107848695) |
