Non-Coding RNA Search

Ss1.1-Pig4-TMW8045A17.3

Sequence:


               
               TTCAAATCCCCAAAGCATATATACGTTTCCATCTGATCTCACCTTTGATACAGAAGTCTG
CAGCAAATGTGGTCCTCTTTGATATCTTTGTCAATATCCTTACCCATAACCTTGCGGAAC
CAGCTTATGAAGCAGATGTGGCACAGCTGGAGTATAAGCTAGTAGCTGGAGAACATGGTT
TAATTATTCGAGTGAAAGGATTCAACCACAAACTACCTCTACTGTTTCAGCTTATAATTG
ACTACTTAGCGGAGTTCACGTCCACACCAGCTGTCTGTCTGTAGCAGCAAGCATAGAGGT
TTGTGTGTGAGGTGTTGTACATAGAAATAAATATTTGTTTGTTTGGTTTTGTTTTTTTGG
CCATACCCATGGCATGTGGAGGTTCCCAGGCCATGGATCGAACCTGCAACTGTAGTTGTG
ACCTGCACTGCAGCTGTGGCAATGCCAGATCATTAATCTGCTGCACCACAGGGGAACTTC
CAAGAAATGTTTATTGATATGGATTATTGTGGATTTTTGGGCTGATGACAGGTATTCCAA
CTTTGGTCACATGTAAGAGCAATATATATTCATTCATTAATTACATTAAATAATGTTGTA
TGCTGTGCTTCAGGCTTGATTTCACTTCCTTTTGCTGTCTGTTTCTCTGCAGCCCACACT
GGCATTTAGGACTGGTTTGAGGTTAATTCCATGCCATATAGCAAGTACAAATTTAAAGCA
CCTGGGACATTGCCTGACACAGAGTAGAACTCACGTGCTTGTGTTCTGTCTTCCTCTTTT
TGTACTCTGTTCCATTGTTTCAAACATGTGTCTTCTTTCCCTTCTAAATTTATGAACTCT
TAGAGTATATATCTTAGTCAACACTTATCTTTTGATAAAGAATATGTTTCATTGTCACTT
TGTCAAAAACTTCGTAAGTAAAGGATGAAATAATATGGGATGCTAGCTGAAGGATTAGAT
CATCAAGTGCCAGGTAAAATAACATAATGTAGTAACAACAACTTTTATGTCTTAGTTTCT
TGGGTAGGACATAAATTATAAGTTTTGGGAACTGGGTTCATATGAGAAAAAAAAAAAAAT
CAGAGGAGATGACCTGGTAGAAATTATACCTGTGCTAAGAGATTATAGCCTCTATATTTT
AGCAAAAACCCTAGAGAAGAATATAGTTCTGTCCTTTATACTCTCATCGTTACCAGTCTC
CACAGGGGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAATCCCCAAAGCATATATACGTTTCCATCTGATCTCACCTTTGATACAGAAGTCTG
CAGCAAATGTGGTCCTCTTTGATATCTTTGTCAATATCCTTACCCATAACCTTGCGGAAC
CAGCTTATGAAGCAGATGTGGCACAGCTGGAGTATAAGCTAGTAGCTGGAGAACATGGTT
TAATTATTCGAGTGAAAGGATTCAACCACAAACTACCTCTACTGTTTCAGCTTATAATTG
ACTACTTAGCGGAGTTCACGTCCACACCAGCTGTCTGTCTGTAGCAGCAAGCATAGAGGT
TTGTGTGTGAGGTGTTGTACATAGAAATAAATATTTGTTTGTTTGGTTTTGTTTTTTTGG
CCATACCCATGGCATGTGGAGGTTCCCAGGCCATGGATCGAACCTGCAACTGTAGTTGTG
ACCTGCACTGCAGCTGTGGCAATGCCAGATCATTAATCTGCTGCACCACAGGGGAACTTC
CAAGAAATGTTTATTGATATGGATTATTGTGGATTTTTGGGCTGATGACAGGTATTCCAA
CTTTGGTCACATGTAAGAGCAATATATATTCATTCATTAATTACATTAAATAATGTTGTA
TGCTGTGCTTCAGGCTTGATTTCACTTCCTTTTGCTGTCTGTTTCTCTGCAGCCCACACT
GGCATTTAGGACTGGTTTGAGGTTAATTCCATGCCATATAGCAAGTACAAATTTAAAGCA
CCTGGGACATTGCCTGACACAGAGTAGAACTCACGTGCTTGTGTTCTGTCTTCCTCTTTT
TGTACTCTGTTCCATTGTTTCAAACATGTGTCTTCTTTCCCTTCTAAATTTATGAACTCT
TAGAGTATATATCTTAGTCAACACTTATCTTTTGATAAAGAATATGTTTCATTGTCACTT
TGTCAAAAACTTCGTAAGTAAAGGATGAAATAATATGGGATGCTAGCTGAAGGATTAGAT
CATCAAGTGCCAGGTAAAATAACATAATGTAGTAACAACAACTTTTATGTCTTAGTTTCT
TGGGTAGGACATAAATTATAAGTTTTGGGAACTGGGTTCATATGAGAAAAAAAAAAAAAT
CAGAGGAGATGACCTGGTAGAAATTATACCTGTGCTAAGAGATTATAGCCTCTATATTTT
AGCAAAAACCCTAGAGAAGAATATAGTTCTGTCCTTTATACTCTCATCGTTACCAGTCTC
CACAGGGGCAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               68-226, + strand, RNAz p=0.93119
               

               
               1039-1157, + strand, RNAz p=0.609566

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               68-226, + strand, RNAz p=0.93119
               

               
               1039-1157, + strand, RNAz p=0.609566

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of X93207, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of X93207, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               68-339, gnl|bosTau2|chr3 (64039413-64039686)
               

               
               68-339, gnl|Hg17|chr1 (51981657-51981406)
               

               
               68-339, gnl|Mm7|chr4 (108427278-108427535)
               


               
               676-932, gnl|bosTau2|chr3 (64040323-64040592)
               

               
               676-932, gnl|canFam2|chr15 (12502516-12502227)
               

               
               676-932, gnl|dasNov1|scaffold_16482 (44264-44522)
               

               
               676-932, gnl|hg17|chr1 (51980548-51980846)
               

               
               676-932, gnl|Hg17|chr1 (51980888-51980652)
               

               
               676-932, gnl|loxAfr1|scaffold_29927 (35167-34873)
               

               
               676-932, gnl|oryCun1|scaffold_211049 (57747-57460)
               

               
               676-932, gnl|rheMac2|chr1 (54622897-54623198)
               


               
               950-1207, gnl|bosTau2|chr3 (64040581-64040824)
               

               
               950-1207, gnl|Hg17|chr1 (51980663-51980382)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-339, gnl|bosTau2|chr3 (64039413-64039686)
               

               
               68-339, gnl|Hg17|chr1 (51981657-51981406)
               

               
               68-339, gnl|Mm7|chr4 (108427278-108427535)
               


               
               676-932, gnl|bosTau2|chr3 (64040323-64040592)
               

               
               676-932, gnl|canFam2|chr15 (12502516-12502227)
               

               
               676-932, gnl|dasNov1|scaffold_16482 (44264-44522)
               

               
               676-932, gnl|hg17|chr1 (51980548-51980846)
               

               
               676-932, gnl|Hg17|chr1 (51980888-51980652)
               

               
               676-932, gnl|loxAfr1|scaffold_29927 (35167-34873)
               

               
               676-932, gnl|oryCun1|scaffold_211049 (57747-57460)
               

               
               676-932, gnl|rheMac2|chr1 (54622897-54623198)
               


               
               950-1207, gnl|bosTau2|chr3 (64040581-64040824)
               

               
               950-1207, gnl|Hg17|chr1 (51980663-51980382)

	68-226, + strand, RNAz p=0.93119
	1039-1157, + strand, RNAz p=0.609566

	68-339, gnl\|bosTau2\|chr3 (64039413-64039686)
	68-339, gnl\|Hg17\|chr1 (51981657-51981406)
	68-339, gnl\|Mm7\|chr4 (108427278-108427535)

	676-932, gnl\|bosTau2\|chr3 (64040323-64040592)
	676-932, gnl\|canFam2\|chr15 (12502516-12502227)
	676-932, gnl\|dasNov1\|scaffold_16482 (44264-44522)
	676-932, gnl\|hg17\|chr1 (51980548-51980846)
	676-932, gnl\|Hg17\|chr1 (51980888-51980652)
	676-932, gnl\|loxAfr1\|scaffold_29927 (35167-34873)
	676-932, gnl\|oryCun1\|scaffold_211049 (57747-57460)
	676-932, gnl\|rheMac2\|chr1 (54622897-54623198)

	950-1207, gnl\|bosTau2\|chr3 (64040581-64040824)
	950-1207, gnl\|Hg17\|chr1 (51980663-51980382)