Non-Coding RNA Search

Ss1.1-Pig4-TMW8045C03.5

Sequence:


               
               TTTATTTTTTAATTATTCTTAAACTCTGGGTGAGAGAGATTATTATCCTCAACTCTCAAA
GTGACTGCAGATGGGACAAAGACAGCTTCCAGCTTAATAAGAACTCTTCCCCACTAGTTT
TCATTCCTGTCTTGTTCTCATAACTGCTTGCATTTGCCCCTGGCAGACAGAAGGCACCTG
GACTCACTTCCCTACCTTTTAGTTGTACTTTTAGGGCTGTAGCCTCTGTTGTACCAGTCA
GACCAGATGGCATTCTTTTCCTTTAAGAGGATAATTATTTTGAATATGCATTGGTCTTAT
CTTTGGGAGAAAAGCATTTTCAGGAGACTTTTTAGGTGGTATTACATCCCTACTCTCCTT
GTATCTGCTGGGCACCTAATTTAAGGCAGATGACTAATGGAATATACTTCATAGTGATGA
GGCTTCAGCAGGAATTTTCTCCTGCCAAACTGTCCTATATTCTTAACTACATTGCAGTAC
AGGAAGGTAATAAATTATTAATCCTAAATCTGTCTCCTCAGATTGTGATAATGACTTGGG
TACATGGCAGCTGGGGGAAGGTAGAGTTTTCTGGCTGTTAACATAAACCATGCAAGCTTT
TTGATTATAAAATTCAGCTAACATTAAGCAAGTCTGGGATATTTTTACATTACAATTTAA
TTGATGTAAGTAAAAAACAATCAGAATCTCCTAAAGTTAGCCTCTCTCCCAATGAAATGA
AGTAATTGTCTTTTGCTTAAATACCCTACCCGTTAGTAAAAGATAAGCATCCTAAGTCCT
TCTCTCTAGCTTGGAAAACTAACTTTGGTGGGTTTGTGTTGCCTTTTAGAAGCATTATGC
AAACAGACTTATTTCCTAATGTGAGAAAGTGAAGAGGGTTAAGAAAATGGCATATTTGGG
CAGTAAATCCAATTCAGTTTAAAAGCTATCTTATTTGGAATGAATAAGCAATGAGATCCT
GCTGTATAGCACTGGGAACTATCTAGTCACCTATGATGGAACATGATGGAGGATAATGTG
AGAAAAAGAATGTATACATGTATGTGTGACTGGGTCACTTGCTCTATAGTAGAAAATTGA
CCTGACACTGTAAACCAGCTATAGGGAAAAAATAAAAATCATTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTTTTTAATTATTCTTAAACTCTGGGTGAGAGAGATTATTATCCTCAACTCTCAAA
GTGACTGCAGATGGGACAAAGACAGCTTCCAGCTTAATAAGAACTCTTCCCCACTAGTTT
TCATTCCTGTCTTGTTCTCATAACTGCTTGCATTTGCCCCTGGCAGACAGAAGGCACCTG
GACTCACTTCCCTACCTTTTAGTTGTACTTTTAGGGCTGTAGCCTCTGTTGTACCAGTCA
GACCAGATGGCATTCTTTTCCTTTAAGAGGATAATTATTTTGAATATGCATTGGTCTTAT
CTTTGGGAGAAAAGCATTTTCAGGAGACTTTTTAGGTGGTATTACATCCCTACTCTCCTT
GTATCTGCTGGGCACCTAATTTAAGGCAGATGACTAATGGAATATACTTCATAGTGATGA
GGCTTCAGCAGGAATTTTCTCCTGCCAAACTGTCCTATATTCTTAACTACATTGCAGTAC
AGGAAGGTAATAAATTATTAATCCTAAATCTGTCTCCTCAGATTGTGATAATGACTTGGG
TACATGGCAGCTGGGGGAAGGTAGAGTTTTCTGGCTGTTAACATAAACCATGCAAGCTTT
TTGATTATAAAATTCAGCTAACATTAAGCAAGTCTGGGATATTTTTACATTACAATTTAA
TTGATGTAAGTAAAAAACAATCAGAATCTCCTAAAGTTAGCCTCTCTCCCAATGAAATGA
AGTAATTGTCTTTTGCTTAAATACCCTACCCGTTAGTAAAAGATAAGCATCCTAAGTCCT
TCTCTCTAGCTTGGAAAACTAACTTTGGTGGGTTTGTGTTGCCTTTTAGAAGCATTATGC
AAACAGACTTATTTCCTAATGTGAGAAAGTGAAGAGGGTTAAGAAAATGGCATATTTGGG
CAGTAAATCCAATTCAGTTTAAAAGCTATCTTATTTGGAATGAATAAGCAATGAGATCCT
GCTGTATAGCACTGGGAACTATCTAGTCACCTATGATGGAACATGATGGAGGATAATGTG
AGAAAAAGAATGTATACATGTATGTGTGACTGGGTCACTTGCTCTATAGTAGAAAATTGA
CCTGACACTGTAAACCAGCTATAGGGAAAAAATAAAAATCATTAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               404-523, - strand, RNAz p=0.603441

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-523, - strand, RNAz p=0.603441

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-771, gnl|bosTau2|chr3 (77331446-77332227)
               

               
               1-771, gnl|Hg17|chr1 (35678558-35677773)
               

               
               1-771, gnl|Mm7|chr4 (126218696-126219511)
               


               
               923-1119, gnl|bosTau2|chr23 (27849008-27849201)
               


               
               938-1103, gnl|bosTau2|chr25 (26306182-26306017)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-771, gnl|bosTau2|chr3 (77331446-77332227)
               

               
               1-771, gnl|Hg17|chr1 (35678558-35677773)
               

               
               1-771, gnl|Mm7|chr4 (126218696-126219511)
               


               
               923-1119, gnl|bosTau2|chr23 (27849008-27849201)
               


               
               938-1103, gnl|bosTau2|chr25 (26306182-26306017)

	1-771, gnl\|bosTau2\|chr3 (77331446-77332227)
	1-771, gnl\|Hg17\|chr1 (35678558-35677773)
	1-771, gnl\|Mm7\|chr4 (126218696-126219511)

	923-1119, gnl\|bosTau2\|chr23 (27849008-27849201)

	938-1103, gnl\|bosTau2\|chr25 (26306182-26306017)