Ss1.1-Pig4-TMW8045C20.5
|
GCGGCTCGAGCTCATCAGACCTTTCTTAACAAAGGGCTTAGTAAATCTATGGGATTTCTG
TCCATCAGAGACACACACGATGAGGACGATTATTTCAAGGACATGCCATCAGATAATAAT
TCTGGACATGAAGATTCCGAAAAGTCCTGCTCCCCTTACCAGTTCAAAGCTAGTGGCCCC
GAAAAGAAAGCTCTCCCCGGCCTGGATGTGCTCCCCAAGAAGAAGATTTGGGCTTCATCC
ATGGACTTGCTTTGCACAGCTGACAGGGACGTCCCCGGCGAGGCTGCCAGATACCGGCAC
TGTCTCCCCGAGGCAGTGACAGTGCGGACTTCAACTGCTCCTAGGAGAAAGGAGGCAAGA
TACTCAGATGGAAGCCTAGCCTTGGATATCTTTGGGCCTCAGAAAATGGACCCAATGTTT
CACACACGAGAAGTGCCCACCTCCACGGCGATATCATGTGCTTTGGACCGAATCCGAGAA
AGACAAAAGAAACTTCAGGTTCTGAGAGAAGCCATGAATGTAGAAGAACCGGTCCGAAGA
TACAAAACTTCCCACAGTGATATCTTCAGTACCTCCAGTGAAAGTCCATCTATTGTTTCC
TCTGAATCAGACTTCAGACAAGTGAGAAAAAGTGAAGCTTCCAAGAGATTCGAGTCCAAC
AGCGGTCTCCCAGGGGTGGAGGAAACCTCAGGTCAGGGCCAGTCACAGAGACCAAGACAG
TATGAAACACCCCTCGAAGGCAGCTTAATTAATCAAGAGATCATGCTAAAGCGGCAGGAA
GAAGAAATGATACAGCTGCAAGCCAGAATGGCCCTTAGACAGTCTCGGTTGAGTCTGTAT
CCTGGAGACACAATCAAAGCTTCCATGCTTGATATCACCAGAGATCCCTTAAGAGAAATA
GCCCTAGAAACAGCGATGACCCAAAGAAAACTGAGAAATTTCTTTGGCCCTGAGTTTGTG
AAAATGACAATTGAGCCATTTATATCTTTGGATTTGCCACGGTCTATCCTTACCAAAAGA
GGGAAGAATGAGGATAACCGAAGAAAAGTCAACATTATGCTTCTGAGTGGACAGAGGCTG
GAACTGACTTGTGACACCAAAACTATCTGTAAAGATGTCTTTGATATGGTCGTGGCCCAC
ATTGGCTTAGTGGAGCATCATCTGTTTGCTTTAGCTACCCTCAAAGACAATGAATATTTC
TTTGTTGATCCTGATCTAAAATTAACCAAAGTGGCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGGCTCGAGCTCATCAGACCTTTCTTAACAAAGGGCTTAGTAAATCTATGGGATTTCTG
TCCATCAGAGACACACACGATGAGGACGATTATTTCAAGGACATGCCATCAGATAATAAT
TCTGGACATGAAGATTCCGAAAAGTCCTGCTCCCCTTACCAGTTCAAAGCTAGTGGCCCC
GAAAAGAAAGCTCTCCCCGGCCTGGATGTGCTCCCCAAGAAGAAGATTTGGGCTTCATCC
ATGGACTTGCTTTGCACAGCTGACAGGGACGTCCCCGGCGAGGCTGCCAGATACCGGCAC
TGTCTCCCCGAGGCAGTGACAGTGCGGACTTCAACTGCTCCTAGGAGAAAGGAGGCAAGA
TACTCAGATGGAAGCCTAGCCTTGGATATCTTTGGGCCTCAGAAAATGGACCCAATGTTT
CACACACGAGAAGTGCCCACCTCCACGGCGATATCATGTGCTTTGGACCGAATCCGAGAA
AGACAAAAGAAACTTCAGGTTCTGAGAGAAGCCATGAATGTAGAAGAACCGGTCCGAAGA
TACAAAACTTCCCACAGTGATATCTTCAGTACCTCCAGTGAAAGTCCATCTATTGTTTCC
TCTGAATCAGACTTCAGACAAGTGAGAAAAAGTGAAGCTTCCAAGAGATTCGAGTCCAAC
AGCGGTCTCCCAGGGGTGGAGGAAACCTCAGGTCAGGGCCAGTCACAGAGACCAAGACAG
TATGAAACACCCCTCGAAGGCAGCTTAATTAATCAAGAGATCATGCTAAAGCGGCAGGAA
GAAGAAATGATACAGCTGCAAGCCAGAATGGCCCTTAGACAGTCTCGGTTGAGTCTGTAT
CCTGGAGACACAATCAAAGCTTCCATGCTTGATATCACCAGAGATCCCTTAAGAGAAATA
GCCCTAGAAACAGCGATGACCCAAAGAAAACTGAGAAATTTCTTTGGCCCTGAGTTTGTG
AAAATGACAATTGAGCCATTTATATCTTTGGATTTGCCACGGTCTATCCTTACCAAAAGA
GGGAAGAATGAGGATAACCGAAGAAAAGTCAACATTATGCTTCTGAGTGGACAGAGGCTG
GAACTGACTTGTGACACCAAAACTATCTGTAAAGATGTCTTTGATATGGTCGTGGCCCAC
ATTGGCTTAGTGGAGCATCATCTGTTTGCTTTAGCTACCCTCAAAGACAATGAATATTTC
TTTGTTGATCCTGATCTAAAATTAACCAAAGTGGCC
|
|
gi|61835502|ref|XP_604964.1| |
Protein identifier
|
gi|61835502|ref|XP_604964.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
12-526, gnl|bosTau2|chr6 (59561234-59560717) |
|
12-526, gnl|Hg17|chr4 (87979622-87980133) |
|
12-526, gnl|Mm7|chr5 (102690721-102691217) |
| |
|
715-936, gnl|bosTau2|chr6 (59536900-59536679) |
|
715-936, gnl|canFam2|chr32 (13211465-13211696) |
|
715-936, gnl|dasNov1|scaffold_38588 (529-760) |
|
715-936, gnl|galGal2|chr4 (46431350-46431116) |
|
715-936, gnl|hg17|chr4 (88000543-88000774) |
|
715-936, gnl|Hg17|chr4 (88000545-88000766) |
|
715-936, gnl|mm7|chr5 (102712871-102713100) |
|
715-936, gnl|Mm7|chr5 (102712873-102713094) |
|
715-936, gnl|monDom2|scaffold_37 (16345156-16344925) |
|
715-936, gnl|oryCun1|scaffold_150214 (22777-22546) |
|
715-936, gnl|panTro1|chr3 (103986844-103987075) |
|
715-936, gnl|rheMac2|chr5 (79669757-79669988) |
|
715-936, gnl|rn3|chr14 (7372045-7371814) |
|
715-936, gnl|xenTro1|scaffold_867 (177181-176953) |
| |
|
1012-1186, gnl|bosTau2|chr6 (59531830-59531656) |
|
1012-1186, gnl|Hg17|chr4 (88010924-88011098) |
|
1012-1186, gnl|Mm7|chr5 (102715245-102715419) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
12-526, gnl|bosTau2|chr6 (59561234-59560717) |
|
12-526, gnl|Hg17|chr4 (87979622-87980133) |
|
12-526, gnl|Mm7|chr5 (102690721-102691217) |
| |
|
715-936, gnl|bosTau2|chr6 (59536900-59536679) |
|
715-936, gnl|canFam2|chr32 (13211465-13211696) |
|
715-936, gnl|dasNov1|scaffold_38588 (529-760) |
|
715-936, gnl|galGal2|chr4 (46431350-46431116) |
|
715-936, gnl|hg17|chr4 (88000543-88000774) |
|
715-936, gnl|Hg17|chr4 (88000545-88000766) |
|
715-936, gnl|mm7|chr5 (102712871-102713100) |
|
715-936, gnl|Mm7|chr5 (102712873-102713094) |
|
715-936, gnl|monDom2|scaffold_37 (16345156-16344925) |
|
715-936, gnl|oryCun1|scaffold_150214 (22777-22546) |
|
715-936, gnl|panTro1|chr3 (103986844-103987075) |
|
715-936, gnl|rheMac2|chr5 (79669757-79669988) |
|
715-936, gnl|rn3|chr14 (7372045-7371814) |
|
715-936, gnl|xenTro1|scaffold_867 (177181-176953) |
| |
|
1012-1186, gnl|bosTau2|chr6 (59531830-59531656) |
|
1012-1186, gnl|Hg17|chr4 (88010924-88011098) |
|
1012-1186, gnl|Mm7|chr5 (102715245-102715419) |
