Ss1.1-Pig4-TMW8045G15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGTGCCACACATATAACCATCGAAGAAAAAAATGAAACCATGTGCACAGCCCTGAGCC AAGGCATTAGCCCTTGCTCCACACTAACAAGCAGCACCGCATCTCCCAGCACCGAGAGCC CCTGCTCCACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGA CCATCAGCAGCCCTAGTTCCACCCTGGAAAGCAAGGCCAACTCAGTTGCAGCAACCAGCT CAACCAAGTTGGAAGATCTGAGTTATTTAGATGGACAGAGAAATGCTCCCCTTCGAACGT CAATTAGGTTACCGTGGCACAATACGGCAGGAGGTAGGGCACCGGAAGCTAAAGCACGAT TTGCTCCTTATAAGCCACAGGACATTTTGTTGAAACCCCTGTTGTTTGAAGTACCAAGCG TAACCACAGACTCTGTGTTTGTGGGAAGGGATTGGCTGTTTCACCAGATAGAAGAAAACT TGAGGAACACAGAACTGACAGAAAACAGAGGAGCAGTGGTTGTTGGAAACGTGGGCTTTG GGAAGACAGCGATCATTTCTAAGTTGGTGGCACTTAGCTGCCACGGAAGCCGCATGAGGC AAATTGCTTCCAACAGCCCTGGTTCATCACCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGTGCCACACATATAACCATCGAAGAAAAAAATGAAACCATGTGCACAGCCCTGAGCC AAGGCATTAGCCCTTGCTCCACACTAACAAGCAGCACCGCATCTCCCAGCACCGAGAGCC CCTGCTCCACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGA CCATCAGCAGCCCTAGTTCCACCCTGGAAAGCAAGGCCAACTCAGTTGCAGCAACCAGCT CAACCAAGTTGGAAGATCTGAGTTATTTAGATGGACAGAGAAATGCTCCCCTTCGAACGT CAATTAGGTTACCGTGGCACAATACGGCAGGAGGTAGGGCACCGGAAGCTAAAGCACGAT TTGCTCCTTATAAGCCACAGGACATTTTGTTGAAACCCCTGTTGTTTGAAGTACCAAGCG TAACCACAGACTCTGTGTTTGTGGGAAGGGATTGGCTGTTTCACCAGATAGAAGAAAACT TGAGGAACACAGAACTGACAGAAAACAGAGGAGCAGTGGTTGTTGGAAACGTGGGCTTTG GGAAGACAGCGATCATTTCTAAGTTGGTGGCACTTAGCTGCCACGGAAGCCGCATGAGGC AAATTGCTTCCAACAGCCCTGGTTCATCACCAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 120-219, - strand, RNAz p=0.553607 | |
| 518-636, + strand, RNAz p=0.610054 | |
| 519-636, - strand, RNAz p=0.972335 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-219, - strand, RNAz p=0.553607 | |
| 518-636, + strand, RNAz p=0.610054 | |
| 519-636, - strand, RNAz p=0.972335 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 44-219, gnl|bosTau2|chr2 (10833078-10832903) | |
| 44-219, gnl|canFam2|chr36 (7950785-7950986) | |
| 44-219, gnl|danRer3|chr21 (10309608-10309427) | |
| 44-219, gnl|dasNov1|scaffold_129062 (260-456) | |
| 44-219, gnl|echTel1|scaffold_309706 (2293-2494) | |
| 44-219, gnl|fr1|chrUn (156846204-156846408) | |
| 44-219, gnl|galGal2|chr7 (37116356-37116557) | |
| 44-219, gnl|hg17|chr2 (159832384-159832585) | |
| 44-219, gnl|Hg17|chr2 (159832387-159832562) | |
| 44-219, gnl|loxAfr1|scaffold_6275 (56634-56433) | |
| 44-219, gnl|mm7|chr2 (59702898-59703099) | |
| 44-219, gnl|Mm7|chr2 (59702901-59703076) | |
| 44-219, gnl|oryCun1|scaffold_206788 (81073-80872) | |
| 44-219, gnl|panTro1|chr13 (49195335-49195536) | |
| 44-219, gnl|rheMac2|chr12 (22691838-22692039) | |
| 44-219, gnl|rn3|chr3 (41388768-41388969) | |
| 44-219, gnl|tetNig1|chr2 (12053131-12052927) | |
| 44-219, gnl|xenTro1|scaffold_311 (1230233-1230034) | |
| 352-636, gnl|bosTau2|chr2 (10811949-10811665) | |
| 352-636, gnl|canFam2|chr36 (7970951-7971158) | |
| 352-636, gnl|danRer3|chr21 (10287702-10287510) | |
| 352-636, gnl|dasNov1|scaffold_85310 (217-4) | |
| 352-636, gnl|echTel1|scaffold_309706 (31622-31843) | |
| 352-636, gnl|fr1|chrUn (156852901-156853106) | |
| 352-636, gnl|galGal2|chr7 (37119997-37120210) | |
| 352-636, gnl|hg17|chr2 (159852515-159852721) | |
| 352-636, gnl|Hg17|chr2 (159852539-159852823) | |
| 352-636, gnl|loxAfr1|scaffold_6275 (39740-39525) | |
| 352-636, gnl|mm7|chr2 (59722116-59722327) | |
| 352-636, gnl|Mm7|chr2 (59722145-59722429) | |
| 352-636, gnl|monDom2|scaffold_2 (52972995-52973199) | |
| 352-636, gnl|oryCun1|scaffold_206788 (61433-61231) | |
| 352-636, gnl|panTro1|chr13 (49215468-49215674) | |
| 352-636, gnl|rheMac2|chr12 (22713174-22713384) | |
| 352-636, gnl|rn3|chr3 (41408037-41408248) | |
| 352-636, gnl|tetNig1|chr2 (12046520-12046315) | |
| 352-636, gnl|xenTro1|scaffold_311 (1220971-1220766) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-219, gnl|bosTau2|chr2 (10833078-10832903) | |
| 44-219, gnl|canFam2|chr36 (7950785-7950986) | |
| 44-219, gnl|danRer3|chr21 (10309608-10309427) | |
| 44-219, gnl|dasNov1|scaffold_129062 (260-456) | |
| 44-219, gnl|echTel1|scaffold_309706 (2293-2494) | |
| 44-219, gnl|fr1|chrUn (156846204-156846408) | |
| 44-219, gnl|galGal2|chr7 (37116356-37116557) | |
| 44-219, gnl|hg17|chr2 (159832384-159832585) | |
| 44-219, gnl|Hg17|chr2 (159832387-159832562) | |
| 44-219, gnl|loxAfr1|scaffold_6275 (56634-56433) | |
| 44-219, gnl|mm7|chr2 (59702898-59703099) | |
| 44-219, gnl|Mm7|chr2 (59702901-59703076) | |
| 44-219, gnl|oryCun1|scaffold_206788 (81073-80872) | |
| 44-219, gnl|panTro1|chr13 (49195335-49195536) | |
| 44-219, gnl|rheMac2|chr12 (22691838-22692039) | |
| 44-219, gnl|rn3|chr3 (41388768-41388969) | |
| 44-219, gnl|tetNig1|chr2 (12053131-12052927) | |
| 44-219, gnl|xenTro1|scaffold_311 (1230233-1230034) | |
| 352-636, gnl|bosTau2|chr2 (10811949-10811665) | |
| 352-636, gnl|canFam2|chr36 (7970951-7971158) | |
| 352-636, gnl|danRer3|chr21 (10287702-10287510) | |
| 352-636, gnl|dasNov1|scaffold_85310 (217-4) | |
| 352-636, gnl|echTel1|scaffold_309706 (31622-31843) | |
| 352-636, gnl|fr1|chrUn (156852901-156853106) | |
| 352-636, gnl|galGal2|chr7 (37119997-37120210) | |
| 352-636, gnl|hg17|chr2 (159852515-159852721) | |
| 352-636, gnl|Hg17|chr2 (159852539-159852823) | |
| 352-636, gnl|loxAfr1|scaffold_6275 (39740-39525) | |
| 352-636, gnl|mm7|chr2 (59722116-59722327) | |
| 352-636, gnl|Mm7|chr2 (59722145-59722429) | |
| 352-636, gnl|monDom2|scaffold_2 (52972995-52973199) | |
| 352-636, gnl|oryCun1|scaffold_206788 (61433-61231) | |
| 352-636, gnl|panTro1|chr13 (49215468-49215674) | |
| 352-636, gnl|rheMac2|chr12 (22713174-22713384) | |
| 352-636, gnl|rn3|chr3 (41408037-41408248) | |
| 352-636, gnl|tetNig1|chr2 (12046520-12046315) | |
| 352-636, gnl|xenTro1|scaffold_311 (1220971-1220766) |