Non-Coding RNA Search

Ss1.1-Pig4-TMW8045G21.5

Sequence:


               
               GCAGAGGGCGGAAGGTCCAATGGCCACCCCCCCGAGCAGCCCAGAGACTTGCCGGGCGAC
AGCTTCCAGATGTCCGTGAGCTCCAGCTCCTCCACCAGCTCACGGGGTTCCTCCCGAGAT
GGGGAGTTCACCCTCACCCTCGCTGAAGAAGGAAGTTAAGTTCGAGTTGCGTGCCTTCCA
TGAGGACATGAAGCCGTCCAAGCTCTTCGAGGACGACGAGAATGAGAAAGAGCAGTACTG
CGTCAGAAAAGTGCGGCCTTCGGAAGAGATGATGGAGCTGGAAAAGGAGAGGAGAGAGCT
CATCCGGAGTCAGGCTGTGAAAAAGAATCCTGGCATCGCAGCAAAGTGGTGGAACCCTCC
CCAGGAAAAGACCATTGAGGAGCAGCTGGACGAGGAACATCTGGAGTCGCACAAAAAGTA
CAAGGAGCGCAAGGAGAGGAGGGCACAGCAGGAGCAATTGCTGATGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCCACCACCCTGTGCCACCCCTGCATCCTCTCGAGAACCTTCCAG
CATGACTGAAAACCCAAAGGAAGACATCGTCACGGAGCAGATAGATTTCTCTGCGGCCCG
TAAACAGTTCCAGCTGATGGAGAATTCCAGGCAAACAGCTGCCAAGGGCCAGAGTACACC
CAGGCTCTTCTCCATCAAGCCCTTCTATAGGCCTCTGGGGTCAATCCACTCAGACAAGAC
GCTAACCATCTCCAGACCGGCTTCTTCGGGGGGACCTCCTGAAGAGTCCTCTGCAGCCAA
GGGACAGAAAGCCCACTGTGCCCCGGAGAGCCAGTCCTCTGGAGAAGGAGGAGGCGGCCA
GGGCAGCACTGCTCCTCAGGCGAAGGAAGGGCCATACAGCGAGGCCTCCAAACACGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGGGCGGAAGGTCCAATGGCCACCCCCCCGAGCAGCCCAGAGACTTGCCGGGCGAC
AGCTTCCAGATGTCCGTGAGCTCCAGCTCCTCCACCAGCTCACGGGGTTCCTCCCGAGAT
GGGGAGTTCACCCTCACCCTCGCTGAAGAAGGAAGTTAAGTTCGAGTTGCGTGCCTTCCA
TGAGGACATGAAGCCGTCCAAGCTCTTCGAGGACGACGAGAATGAGAAAGAGCAGTACTG
CGTCAGAAAAGTGCGGCCTTCGGAAGAGATGATGGAGCTGGAAAAGGAGAGGAGAGAGCT
CATCCGGAGTCAGGCTGTGAAAAAGAATCCTGGCATCGCAGCAAAGTGGTGGAACCCTCC
CCAGGAAAAGACCATTGAGGAGCAGCTGGACGAGGAACATCTGGAGTCGCACAAAAAGTA
CAAGGAGCGCAAGGAGAGGAGGGCACAGCAGGAGCAATTGCTGATGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCCACCACCCTGTGCCACCCCTGCATCCTCTCGAGAACCTTCCAG
CATGACTGAAAACCCAAAGGAAGACATCGTCACGGAGCAGATAGATTTCTCTGCGGCCCG
TAAACAGTTCCAGCTGATGGAGAATTCCAGGCAAACAGCTGCCAAGGGCCAGAGTACACC
CAGGCTCTTCTCCATCAAGCCCTTCTATAGGCCTCTGGGGTCAATCCACTCAGACAAGAC
GCTAACCATCTCCAGACCGGCTTCTTCGGGGGGACCTCCTGAAGAGTCCTCTGCAGCCAA
GGGACAGAAAGCCCACTGTGCCCCGGAGAGCCAGTCCTCTGGAGAAGGAGGAGGCGGCCA
GGGCAGCACTGCTCCTCAGGCGAAGGAAGGGCCATACAGCGAGGCCTCCAAACACGGGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               571-730, - strand, RNAz p=0.908405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               571-730, - strand, RNAz p=0.908405

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               441-572, - strand, RNAmicro p=0.999841
               

               
               681-746, - strand, RNAmicro p=0.988335

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               441-572, - strand, RNAmicro p=0.999841
               

               
               681-746, - strand, RNAmicro p=0.988335

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr8 (53529283-53528397)
               

               
               1-900, gnl|Hg17|chr9 (109978448-109979349)
               

               
               1-900, gnl|Mm7|chr4 (57896437-57897401)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr8 (53529283-53528397)
               

               
               1-900, gnl|Hg17|chr9 (109978448-109979349)
               

               
               1-900, gnl|Mm7|chr4 (57896437-57897401)

	441-572, - strand, RNAmicro p=0.999841
	681-746, - strand, RNAmicro p=0.988335

	1-900, gnl\|bosTau2\|chr8 (53529283-53528397)
	1-900, gnl\|Hg17\|chr9 (109978448-109979349)
	1-900, gnl\|Mm7\|chr4 (57896437-57897401)