Ss1.1-Pig4-TMW8045I04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCGCGCCGCCGCTCGCCCAGCCGGAAGAACTCACGACGAGTCTGCACAGTTTTAAGA ACAAGACCTTTAAAAAAGCCAGAGTCTGCGGGGTTTGCAAACAGATTATCGACGGTCGAG GGCTGTCATGCCGAGCCTGCAAGTACGCCTGCCACCAGCCATGTGAAGCCGCGGTCGTGA GTCCCCGCTGTGCGAAAACCCACCTGGAGCAGGCTCCGGAGGTGTCCTCACCACCCGCTT CTCCGTGCCGTGACAGACCGTCCAGGCCCCCCGCGCCGCGCCCCGCCATGGAGGACGGCC GCGAGCTGGACCTCACCTACATCACGGAGCGCATCATCGCCGTGTCCTTCCCCGCCGGCT GCGCCGAGGAGTCGTACCTGCACAGCCTGCAGGAGGTGACGCGCATGCTGCGGTCCAAGC ACGGCGACAACTACTTGGTATTAAACCTTTCAGAAAAGAGGTATGATCTTACGAAGCTTA ACCCAAAGACCCTGGACGTGGGCTGGCCCGAGCTGCACGCGCCGCCCCTGGATAAGGTGT GTACCATTTGCAAGGCGCAGGAGGCCTGGCTGAACAGCGACCCCCAGCACGTGGTTGTCA TTCACTGCAGGGGCGGAAAGGGACGCATCGGCGTGGTCGTATCATCTTATATGCACTTCA CCAACGTCTCGGCCAGTGCCGACCAGGCCCTCGACAGATTTGCAATGAAGAAGTTTTATG ATGATAAACTTTCAGCTTTAATGCAGCCTTCCCAGAAACGGTACGTGCAGTTTCTCAGCG GGCTCCTGTCTGGGACCGTGAAGATGAACGCCTCGCCCCTGTTCCTGCATTTCGTCATCC TGCACGGAACCCCCAACTTTGACTCGGGTGGAGCGTGCCGGCCCTTTCTGAAGCTCTACC AAGCCATGCAGCCCGTGTACACGTCGGGGATCTACAACGTTGGCCCAGAACACCAGAGCA GGATCCACATTGCCGTAGAGCCGGCCCAGCTCCTGGCCATGAAAGTGGCCACACCCCCGC CTTCCGTCTTGCAGCTGAACAAGAAAGCTGGAGATTTGGCCAACGAACTGGTTCGGCACT TTCTGATCGAGTGCACCCCAAAGGGAGTGCGGTTGAAAGGCTGCTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCGCGCCGCCGCTCGCCCAGCCGGAAGAACTCACGACGAGTCTGCACAGTTTTAAGA ACAAGACCTTTAAAAAAGCCAGAGTCTGCGGGGTTTGCAAACAGATTATCGACGGTCGAG GGCTGTCATGCCGAGCCTGCAAGTACGCCTGCCACCAGCCATGTGAAGCCGCGGTCGTGA GTCCCCGCTGTGCGAAAACCCACCTGGAGCAGGCTCCGGAGGTGTCCTCACCACCCGCTT CTCCGTGCCGTGACAGACCGTCCAGGCCCCCCGCGCCGCGCCCCGCCATGGAGGACGGCC GCGAGCTGGACCTCACCTACATCACGGAGCGCATCATCGCCGTGTCCTTCCCCGCCGGCT GCGCCGAGGAGTCGTACCTGCACAGCCTGCAGGAGGTGACGCGCATGCTGCGGTCCAAGC ACGGCGACAACTACTTGGTATTAAACCTTTCAGAAAAGAGGTATGATCTTACGAAGCTTA ACCCAAAGACCCTGGACGTGGGCTGGCCCGAGCTGCACGCGCCGCCCCTGGATAAGGTGT GTACCATTTGCAAGGCGCAGGAGGCCTGGCTGAACAGCGACCCCCAGCACGTGGTTGTCA TTCACTGCAGGGGCGGAAAGGGACGCATCGGCGTGGTCGTATCATCTTATATGCACTTCA CCAACGTCTCGGCCAGTGCCGACCAGGCCCTCGACAGATTTGCAATGAAGAAGTTTTATG ATGATAAACTTTCAGCTTTAATGCAGCCTTCCCAGAAACGGTACGTGCAGTTTCTCAGCG GGCTCCTGTCTGGGACCGTGAAGATGAACGCCTCGCCCCTGTTCCTGCATTTCGTCATCC TGCACGGAACCCCCAACTTTGACTCGGGTGGAGCGTGCCGGCCCTTTCTGAAGCTCTACC AAGCCATGCAGCCCGTGTACACGTCGGGGATCTACAACGTTGGCCCAGAACACCAGAGCA GGATCCACATTGCCGTAGAGCCGGCCCAGCTCCTGGCCATGAAAGTGGCCACACCCCCGC CTTCCGTCTTGCAGCTGAACAAGAAAGCTGGAGATTTGGCCAACGAACTGGTTCGGCACT TTCTGATCGAGTGCACCCCAAAGGGAGTGCGGTTGAAAGGCTGCTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 326-439, - strand, RNAz p=0.713546 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 326-439, - strand, RNAz p=0.713546 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 21-135, gnl|bosTau2|chr4 (44186915-44187029) | |
| 21-135, gnl|canFam2|chr16 (3305621-3305241) | |
| 21-135, gnl|dasNov1|scaffold_59797 (8922-9282) | |
| 21-135, gnl|echTel1|scaffold_279302 (32134-32540) | |
| 21-135, gnl|hg17|chr7 (47341869-47342275) | |
| 21-135, gnl|Hg17|chr7 (47341988-47341874) | |
| 21-135, gnl|loxAfr1|scaffold_24664 (45197-45797) | |
| 21-135, gnl|mm7|chr11 (8567739-8568107) | |
| 21-135, gnl|Mm7|chr11 (8567862-8567748) | |
| 21-135, gnl|monDom2|scaffold_5 (65031125-65030717) | |
| 21-135, gnl|oryCun1|scaffold_124900 (1216-856) | |
| 21-135, gnl|panTro1|chr6 (48806616-48807022) | |
| 21-135, gnl|rheMac2|chr3 (78954692-78954292) | |
| 21-135, gnl|rn3|chr14 (89201485-89201834) | |
| 262-439, gnl|bosTau2|chr4 (44245634-44245811) | |
| 262-439, gnl|canFam2|chr37 (27669363-27669480) | |
| 262-439, gnl|danRer3|chr17 (40697094-40697207) | |
| 262-439, gnl|dasNov1|scaffold_206203 (926-809) | |
| 262-439, gnl|echTel1|scaffold_306649 (10180-10297) | |
| 262-439, gnl|fr1|chrUn (132869386-132869269) | |
| 262-439, gnl|galGal2|chr2 (55007343-55007457) | |
| 262-439, gnl|hg17|chr7 (47252316-47252433) | |
| 262-439, gnl|Hg17|chr7 (47252500-47252323) | |
| 262-439, gnl|loxAfr1|scaffold_47541 (16346-16228) | |
| 262-439, gnl|mm7|chr11 (8500931-8501048) | |
| 262-439, gnl|Mm7|chr11 (8501119-8500938) | |
| 262-439, gnl|monDom2|scaffold_5 (65158552-65158438) | |
| 262-439, gnl|panTro1|chr6 (48716849-48716966) | |
| 262-439, gnl|rheMac2|chr3 (79043620-79043503) | |
| 262-439, gnl|rn3|chr14 (89130263-89130380) | |
| 262-439, gnl|tetNig1|chr15 (7119216-7119102) | |
| 262-439, gnl|xenTro1|scaffold_26 (1670093-1669977) | |
| 487-612, gnl|bosTau2|chr4 (44249777-44249902) | |
| 487-612, gnl|canFam2|chr37 (27665794-27665908) | |
| 487-612, gnl|danRer3|chr17 (40696506-40696613) | |
| 487-612, gnl|dasNov1|scaffold_186074 (3400-3287) | |
| 487-612, gnl|echTel1|scaffold_306649 (7042-7154) | |
| 487-612, gnl|fr1|chrUn (132869716-132869601) | |
| 487-612, gnl|galGal2|chr2 (54991492-54991605) | |
| 487-612, gnl|hg17|chr7 (47248111-47248226) | |
| 487-612, gnl|Hg17|chr7 (47248244-47248119) | |
| 487-612, gnl|loxAfr1|scaffold_8397 (60692-60805) | |
| 487-612, gnl|mm7|chr11 (8497228-8497343) | |
| 487-612, gnl|Mm7|chr11 (8497361-8497236) | |
| 487-612, gnl|monDom2|scaffold_5 (65163303-65163193) | |
| 487-612, gnl|panTro1|chr6 (48712660-48712775) | |
| 487-612, gnl|rheMac2|chr3 (79047762-79047647) | |
| 487-612, gnl|rn3|chr14 (89126543-89126658) | |
| 487-612, gnl|tetNig1|chr15 (7119600-7119489) | |
| 487-612, gnl|xenTro1|scaffold_26 (1673272-1673159) | |
| 760-873, gnl|bosTau2|chr4 (44264486-44264599) | |
| 760-873, gnl|canFam2|chrUn (50168532-50168400) | |
| 760-873, gnl|danRer3|chr17 (40684267-40684429) | |
| 760-873, gnl|dasNov1|scaffold_12944 (2997-2849) | |
| 760-873, gnl|echTel1|scaffold_286391 (38126-38261) | |
| 760-873, gnl|fr1|chrUn (132871512-132871384) | |
| 760-873, gnl|hg17|chr7 (47227905-47228064) | |
| 760-873, gnl|Hg17|chr7 (47228045-47227932) | |
| 760-873, gnl|loxAfr1|scaffold_9897 (3069-2912) | |
| 760-873, gnl|mm7|chr11 (8484394-8484534) | |
| 760-873, gnl|Mm7|chr11 (8484518-8484405) | |
| 760-873, gnl|oryCun1|scaffold_45168 (1101-1240) | |
| 760-873, gnl|panTro1|chr6 (48692485-48692644) | |
| 760-873, gnl|rheMac2|chr3 (79067507-79067349) | |
| 760-873, gnl|rn3|chr14 (89115163-89115303) | |
| 760-873, gnl|tetNig1|chr15 (7121651-7121534) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-135, gnl|bosTau2|chr4 (44186915-44187029) | |
| 21-135, gnl|canFam2|chr16 (3305621-3305241) | |
| 21-135, gnl|dasNov1|scaffold_59797 (8922-9282) | |
| 21-135, gnl|echTel1|scaffold_279302 (32134-32540) | |
| 21-135, gnl|hg17|chr7 (47341869-47342275) | |
| 21-135, gnl|Hg17|chr7 (47341988-47341874) | |
| 21-135, gnl|loxAfr1|scaffold_24664 (45197-45797) | |
| 21-135, gnl|mm7|chr11 (8567739-8568107) | |
| 21-135, gnl|Mm7|chr11 (8567862-8567748) | |
| 21-135, gnl|monDom2|scaffold_5 (65031125-65030717) | |
| 21-135, gnl|oryCun1|scaffold_124900 (1216-856) | |
| 21-135, gnl|panTro1|chr6 (48806616-48807022) | |
| 21-135, gnl|rheMac2|chr3 (78954692-78954292) | |
| 21-135, gnl|rn3|chr14 (89201485-89201834) | |
| 262-439, gnl|bosTau2|chr4 (44245634-44245811) | |
| 262-439, gnl|canFam2|chr37 (27669363-27669480) | |
| 262-439, gnl|danRer3|chr17 (40697094-40697207) | |
| 262-439, gnl|dasNov1|scaffold_206203 (926-809) | |
| 262-439, gnl|echTel1|scaffold_306649 (10180-10297) | |
| 262-439, gnl|fr1|chrUn (132869386-132869269) | |
| 262-439, gnl|galGal2|chr2 (55007343-55007457) | |
| 262-439, gnl|hg17|chr7 (47252316-47252433) | |
| 262-439, gnl|Hg17|chr7 (47252500-47252323) | |
| 262-439, gnl|loxAfr1|scaffold_47541 (16346-16228) | |
| 262-439, gnl|mm7|chr11 (8500931-8501048) | |
| 262-439, gnl|Mm7|chr11 (8501119-8500938) | |
| 262-439, gnl|monDom2|scaffold_5 (65158552-65158438) | |
| 262-439, gnl|panTro1|chr6 (48716849-48716966) | |
| 262-439, gnl|rheMac2|chr3 (79043620-79043503) | |
| 262-439, gnl|rn3|chr14 (89130263-89130380) | |
| 262-439, gnl|tetNig1|chr15 (7119216-7119102) | |
| 262-439, gnl|xenTro1|scaffold_26 (1670093-1669977) | |
| 487-612, gnl|bosTau2|chr4 (44249777-44249902) | |
| 487-612, gnl|canFam2|chr37 (27665794-27665908) | |
| 487-612, gnl|danRer3|chr17 (40696506-40696613) | |
| 487-612, gnl|dasNov1|scaffold_186074 (3400-3287) | |
| 487-612, gnl|echTel1|scaffold_306649 (7042-7154) | |
| 487-612, gnl|fr1|chrUn (132869716-132869601) | |
| 487-612, gnl|galGal2|chr2 (54991492-54991605) | |
| 487-612, gnl|hg17|chr7 (47248111-47248226) | |
| 487-612, gnl|Hg17|chr7 (47248244-47248119) | |
| 487-612, gnl|loxAfr1|scaffold_8397 (60692-60805) | |
| 487-612, gnl|mm7|chr11 (8497228-8497343) | |
| 487-612, gnl|Mm7|chr11 (8497361-8497236) | |
| 487-612, gnl|monDom2|scaffold_5 (65163303-65163193) | |
| 487-612, gnl|panTro1|chr6 (48712660-48712775) | |
| 487-612, gnl|rheMac2|chr3 (79047762-79047647) | |
| 487-612, gnl|rn3|chr14 (89126543-89126658) | |
| 487-612, gnl|tetNig1|chr15 (7119600-7119489) | |
| 487-612, gnl|xenTro1|scaffold_26 (1673272-1673159) | |
| 760-873, gnl|bosTau2|chr4 (44264486-44264599) | |
| 760-873, gnl|canFam2|chrUn (50168532-50168400) | |
| 760-873, gnl|danRer3|chr17 (40684267-40684429) | |
| 760-873, gnl|dasNov1|scaffold_12944 (2997-2849) | |
| 760-873, gnl|echTel1|scaffold_286391 (38126-38261) | |
| 760-873, gnl|fr1|chrUn (132871512-132871384) | |
| 760-873, gnl|hg17|chr7 (47227905-47228064) | |
| 760-873, gnl|Hg17|chr7 (47228045-47227932) | |
| 760-873, gnl|loxAfr1|scaffold_9897 (3069-2912) | |
| 760-873, gnl|mm7|chr11 (8484394-8484534) | |
| 760-873, gnl|Mm7|chr11 (8484518-8484405) | |
| 760-873, gnl|oryCun1|scaffold_45168 (1101-1240) | |
| 760-873, gnl|panTro1|chr6 (48692485-48692644) | |
| 760-873, gnl|rheMac2|chr3 (79067507-79067349) | |
| 760-873, gnl|rn3|chr14 (89115163-89115303) | |
| 760-873, gnl|tetNig1|chr15 (7121651-7121534) |