Non-Coding RNA Search

Ss1.1-Pig4-TMW8045I22.3

Sequence:


               
               GCCTCTCTGCGGCAGGGGCCACAGCAGCGACACACAATAACTGACACGTCTCTGGAAAAC
TCATTTGCCCAAAGGGCAGGTCTCGGTGAGCGGGACCCTGGCGCATGCTCGGCTTCCATG
AAATCAGCTCCATCTCCGTGGCCGGCTGCTTACAACAAAGACCCGGGTTATTTCTGTCCT
TCGGCTCCTGAAGAAGCCCCTGGAGGCCCGGAGGCTCCGGCCACTTGGGCCCCTCCTGTC
CGGCCGCAGCGTTCGGACTTGCCAAGAGCCCGCCTTCCGGGCTAATTGCTCTTGGCCCGC
AGACCCAGGGCAGCCTGGCACGGAGCCGAGCCATGCTGATCTCCCCCCGTCCTTGGCAGG
GTGACCCGTGGTGAGAGAAGGGGGTCCCTTTCCTGCAGGGGCCCCGTGGAGGGAGTTCCA
CCCATATGTGATGATCTCGTTTAAGGGCCCCAGCAGATGGGATTTTCATCTTCATTGCAG
GATACTTCCTTCCCCTGCTGCTTGGTGAACCTGTTGGGGATTCTGGAGGCCCAGAGAGGG
TTTGGGAAGTGGCCGTGTGGTCTCATCACCCCTTTATCTGGGAGGGTCTCGTCGGAGGAC
AGATTTCCCCTACGGATCGCTCCGGCTCTCTGTCTTCCCACAGACCCCGAAGTGGGTGTC
CTCAAAGGCTGGTTATTGGTTTTGAAAATCACTTTGGTTTAATTTTAGGAAGAAAGTCAT
CGAAATGTTCACATCAGTCATCAAAAGCCACGAATGGCTTAAAAGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCTCTGCGGCAGGGGCCACAGCAGCGACACACAATAACTGACACGTCTCTGGAAAAC
TCATTTGCCCAAAGGGCAGGTCTCGGTGAGCGGGACCCTGGCGCATGCTCGGCTTCCATG
AAATCAGCTCCATCTCCGTGGCCGGCTGCTTACAACAAAGACCCGGGTTATTTCTGTCCT
TCGGCTCCTGAAGAAGCCCCTGGAGGCCCGGAGGCTCCGGCCACTTGGGCCCCTCCTGTC
CGGCCGCAGCGTTCGGACTTGCCAAGAGCCCGCCTTCCGGGCTAATTGCTCTTGGCCCGC
AGACCCAGGGCAGCCTGGCACGGAGCCGAGCCATGCTGATCTCCCCCCGTCCTTGGCAGG
GTGACCCGTGGTGAGAGAAGGGGGTCCCTTTCCTGCAGGGGCCCCGTGGAGGGAGTTCCA
CCCATATGTGATGATCTCGTTTAAGGGCCCCAGCAGATGGGATTTTCATCTTCATTGCAG
GATACTTCCTTCCCCTGCTGCTTGGTGAACCTGTTGGGGATTCTGGAGGCCCAGAGAGGG
TTTGGGAAGTGGCCGTGTGGTCTCATCACCCCTTTATCTGGGAGGGTCTCGTCGGAGGAC
AGATTTCCCCTACGGATCGCTCCGGCTCTCTGTCTTCCCACAGACCCCGAAGTGGGTGTC
CTCAAAGGCTGGTTATTGGTTTTGAAAATCACTTTGGTTTAATTTTAGGAAGAAAGTCAT
CGAAATGTTCACATCAGTCATCAAAAGCCACGAATGGCTTAAAAGTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               274-499, + strand, RNAz p=0.999979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-499, + strand, RNAz p=0.999979

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-764, gnl|bosTau2|chr10 (51012019-51011238)
               

               
               4-764, gnl|Hg17|chr14 (72154422-72153702)
               

               
               4-764, gnl|Mm7|chr12 (81211226-81210502)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-764, gnl|bosTau2|chr10 (51012019-51011238)
               

               
               4-764, gnl|Hg17|chr14 (72154422-72153702)
               

               
               4-764, gnl|Mm7|chr12 (81211226-81210502)

	4-764, gnl\|bosTau2\|chr10 (51012019-51011238)
	4-764, gnl\|Hg17\|chr14 (72154422-72153702)
	4-764, gnl\|Mm7\|chr12 (81211226-81210502)