Non-Coding RNA Search

Ss1.1-Pig4-TMW8045J22.5

Sequence:


               
               CTTCGTTTCTGCTGCGCCATGACAGGAGCTCCAGAGGGGACTCTTTTTTTAACCGCAGGT
TGTTTTCTTAAAGGAAAATTTGAAAAGCGAATGCTTTGGTGAGGGAGGAGAATGCTTTGA
GGAGGGGGTCCTTGTTCACCCAGGAGTGTGGCTTTCCCTGCAAGCTAGTTCCCCCACCAC
ACAGATTGCCCTCCATCCTCTTAGACTTGAACCCTTTGGTGAACTCTGGGTTGCCTTTTG
GGCTGGCAAAGCCTGCAAGTCGTCGAGGCCCTCTTTTGCTGGGTATTCTCTGAGGAAGAG
GGGCATGTTTTCTGGAGTCCAAGGGAGAAAGCTTAACATTATTAAGTCTGGCGGGCTTGA
CAGTTGAGAAACTTAGAACGACTCACCTGTCCAGTCATAGCGATCTAACAGGACTTTTGT
AAAGGGCGCTAACAAAAACGTCAGTCCCATCCCCGAACGGGCAATCGCTGTAGCAAAAGC
TAATCGTTTTTTGAAGTATTTTGTAGTTACCACAGTAGCCGTTTGGTACAAGAAAGCAGA
ACCCAAACCTAAAAGAAAAACAAAGCTTGGAATTACCTTCACATTAAGCGGCTTGGTACC
AGGTGAGATATTCTCCTGGACCTGAGATGATAGAAGTAGGCCTTTTGTACTCATGGACAG
TAAAAAGGCATATCCCTAGTTCCCTCTTTTAAAGTCTTAATTTTACATCGGACTCACCAG
GTAAAAATCCCATAGTCACACAGAGGAAGGGAATGCTTGTGGCCTGGCTGCTGATCAGAT
ATCCACCAGTCACAAGGAGAGCCCCCAAAATTGAGGCAGTTTTCGCTCCAATTATGTCGT
AAATAATGGCAGCTAGGGGACCTTGGGAAAAGAAACAAATACTAGTTAAATGTGTTCTGG
CATCCCTTCTGGTGTGGGATTTAAATGAGCAACTAGAGGAAAATAAGAGGACTCTACTAT
CCCTGAAAAAGATGTCTCTATTGGGTTTCTTAATATTCCCAGCCCCACACTATTTTGCTT
TTTGGAAAAAGAAACTTTTGTTGCTTTTTGTTTGTTTTAAAGAAAATTGTAAATAAGCAT
GTTTGGAAGGGAAGCTTACTGAAAATGCATAAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGTTTCTGCTGCGCCATGACAGGAGCTCCAGAGGGGACTCTTTTTTTAACCGCAGGT
TGTTTTCTTAAAGGAAAATTTGAAAAGCGAATGCTTTGGTGAGGGAGGAGAATGCTTTGA
GGAGGGGGTCCTTGTTCACCCAGGAGTGTGGCTTTCCCTGCAAGCTAGTTCCCCCACCAC
ACAGATTGCCCTCCATCCTCTTAGACTTGAACCCTTTGGTGAACTCTGGGTTGCCTTTTG
GGCTGGCAAAGCCTGCAAGTCGTCGAGGCCCTCTTTTGCTGGGTATTCTCTGAGGAAGAG
GGGCATGTTTTCTGGAGTCCAAGGGAGAAAGCTTAACATTATTAAGTCTGGCGGGCTTGA
CAGTTGAGAAACTTAGAACGACTCACCTGTCCAGTCATAGCGATCTAACAGGACTTTTGT
AAAGGGCGCTAACAAAAACGTCAGTCCCATCCCCGAACGGGCAATCGCTGTAGCAAAAGC
TAATCGTTTTTTGAAGTATTTTGTAGTTACCACAGTAGCCGTTTGGTACAAGAAAGCAGA
ACCCAAACCTAAAAGAAAAACAAAGCTTGGAATTACCTTCACATTAAGCGGCTTGGTACC
AGGTGAGATATTCTCCTGGACCTGAGATGATAGAAGTAGGCCTTTTGTACTCATGGACAG
TAAAAAGGCATATCCCTAGTTCCCTCTTTTAAAGTCTTAATTTTACATCGGACTCACCAG
GTAAAAATCCCATAGTCACACAGAGGAAGGGAATGCTTGTGGCCTGGCTGCTGATCAGAT
ATCCACCAGTCACAAGGAGAGCCCCCAAAATTGAGGCAGTTTTCGCTCCAATTATGTCGT
AAATAATGGCAGCTAGGGGACCTTGGGAAAAGAAACAAATACTAGTTAAATGTGTTCTGG
CATCCCTTCTGGTGTGGGATTTAAATGAGCAACTAGAGGAAAATAAGAGGACTCTACTAT
CCCTGAAAAAGATGTCTCTATTGGGTTTCTTAATATTCCCAGCCCCACACTATTTTGCTT
TTTGGAAAAAGAAACTTTTGTTGCTTTTTGTTTGTTTTAAAGAAAATTGTAAATAAGCAT
GTTTGGAAGGGAAGCTTACTGAAAATGCATAAAACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               752-867, - strand, RNAz p=0.587333

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               752-867, - strand, RNAz p=0.587333

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               108-1110, gnl|bosTau2|chr3 (29691552-29692567)
               

               
               108-1110, gnl|Hg17|chr1 (110635276-110636715)
               

               
               108-1110, gnl|Mm7|chr3 (107117934-107116863)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-1110, gnl|bosTau2|chr3 (29691552-29692567)
               

               
               108-1110, gnl|Hg17|chr1 (110635276-110636715)
               

               
               108-1110, gnl|Mm7|chr3 (107117934-107116863)

	108-1110, gnl\|bosTau2\|chr3 (29691552-29692567)
	108-1110, gnl\|Hg17\|chr1 (110635276-110636715)
	108-1110, gnl\|Mm7\|chr3 (107117934-107116863)