Non-Coding RNA Search

Ss1.1-Pig4-TMW8045O16.5

Sequence:


               
               GGAATGTGCTGGGTTTCCAACTTTCTCCTGAAAGCCAAAGTCACCTCACAGAAACAAAGC
CAAAGCACATGGACGCATCTCCCGACCTCGCCGCCAAGGAAACTCTCTTGCCTCCCTGAC
CCAGGAGAAATGGGCCAACCCCATTAAACTCTGCCCCCCTCCCCCATGAGGTTTTTGTTT
TCACATCATGCAGGTGGGTGTCAAGGTTTAGAGGGGAACTTGCCCGTGGCTGTCAGTGGC
AGCACAAAGCTCCCCCTCATTACTGCGCTGCAGCCCAGCCCTTTCGAGGAGACCTCCAGT
AGATGGTTCTCTCTCAACCCTGATCCCAGCGCTCCCTCCCCAATGGCTGTAATAACACCA
GCTGTCTGTTACTCAAACTCTGACTGAGGAGGAAAAAGCACTGATTATCCAAATACAGTC
ATTAAAGGGGAAATGTGTTTTTAGGACTGTCAGAGTGATTAATGAGGGCTAGCCATCTTT
GCAAATGCACTTGTTTAGTCTAACTGGCAGCTTCTATTTTCCTATTGATTTATTGCAGCC
GTTGCCCGGCCTCAGTGTGTGCGGAGTCAGGGCGCTTCACAACTGTGCCCTGTTTAAACA
GGAAAAGCATGCACCATTTTGTCCAGGAGGGAGGGAGCAGCCAAAAGTCTCTCCTTCAGT
TCGGTCTCTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATGTGCTGGGTTTCCAACTTTCTCCTGAAAGCCAAAGTCACCTCACAGAAACAAAGC
CAAAGCACATGGACGCATCTCCCGACCTCGCCGCCAAGGAAACTCTCTTGCCTCCCTGAC
CCAGGAGAAATGGGCCAACCCCATTAAACTCTGCCCCCCTCCCCCATGAGGTTTTTGTTT
TCACATCATGCAGGTGGGTGTCAAGGTTTAGAGGGGAACTTGCCCGTGGCTGTCAGTGGC
AGCACAAAGCTCCCCCTCATTACTGCGCTGCAGCCCAGCCCTTTCGAGGAGACCTCCAGT
AGATGGTTCTCTCTCAACCCTGATCCCAGCGCTCCCTCCCCAATGGCTGTAATAACACCA
GCTGTCTGTTACTCAAACTCTGACTGAGGAGGAAAAAGCACTGATTATCCAAATACAGTC
ATTAAAGGGGAAATGTGTTTTTAGGACTGTCAGAGTGATTAATGAGGGCTAGCCATCTTT
GCAAATGCACTTGTTTAGTCTAACTGGCAGCTTCTATTTTCCTATTGATTTATTGCAGCC
GTTGCCCGGCCTCAGTGTGTGCGGAGTCAGGGCGCTTCACAACTGTGCCCTGTTTAAACA
GGAAAAGCATGCACCATTTTGTCCAGGAGGGAGGGAGCAGCCAAAAGTCTCTCCTTCAGT
TCGGTCTCTAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               550-665, - strand, RNAz p=0.995914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               550-665, - strand, RNAz p=0.995914

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-672, gnl|bosTau2|chr27 (21581391-21580724)
               

               
               3-672, gnl|Hg17|chr8 (37679711-37680405)
               

               
               3-672, gnl|Mm7|chr8 (25740006-25740700)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-672, gnl|bosTau2|chr27 (21581391-21580724)
               

               
               3-672, gnl|Hg17|chr8 (37679711-37680405)
               

               
               3-672, gnl|Mm7|chr8 (25740006-25740700)

	3-672, gnl\|bosTau2\|chr27 (21581391-21580724)
	3-672, gnl\|Hg17\|chr8 (37679711-37680405)
	3-672, gnl\|Mm7\|chr8 (25740006-25740700)