Non-Coding RNA Search

Ss1.1-Pig4-TMW8045O24.3

Sequence:


               
               GCCGGGAAGGAGGAGGGCAGCAGGGAGGCGAGGCTGCCGAGGCGGAGGGATCTGCGCATC
AAAGCGAGCGAGGCGAGCAAAGTTTGGCTGAGGGTTGGACTTTCCTTCCTGGAGGCGGCA
CCCAAACAGCCACCCCGTGCGGAAACCCAAACTTTCTTCTGCCACTCGGAGCCCCGCGGC
CGCCGCCTCCGCCCCGCGTCCGGGGCCTTCCCGATCCCGTGCCGCTGCCGCCCGCCCTTC
TCCCCGCCGCTCTTCTCCTCACCGAGGGAGCCGCCCGGGGCACAGGGCCGCACGCCGAGC
CCCGCAGGCTGCAGCGCCGCGGCCCGGCCGGGAGCACCGGCAAGTTCGCCGAGAGTTGAG
GCGAAGTTTGGGCGGCCGCGGCCAGCCCGGCCGAGCTCCCCGCTGCGCCCCCGGCGTTCC
GCCGCGCCCAGCCCCGCCGGGGGCGCCCCTCGCCGCCCGCGCGCCCTCCCCAGCCATGTC
GTCCATCCTGCCCTTCACGCCCCCGATCGTGAAACGCCTGCTGGGCTGGAAGAAGGGTGA
GCAGAACGGGCAGGAGGAGAAGTGGTGCGAGAAGGCGGTCAAGAGTTTGGTCAAGAAGCT
CAAGAAGACGGGGCAACTGGACGAACTGGAGAAGGCCATCACCACGCAGAACGTCAACAC
CAAGTGCATCACCATCCCCAGGTCCCTGGATGGCCGGCTGCAGGTGTCCCACCGGAAGGG
GCTCCCCCATGTCATCTACTGCCGCCTGTGGCGATGGCCTGACCTTCACAGCCACCATGA
GCTGCGGGCCATGGAGCTGTGTGAGTTCGCCTTCAACATGAAGAAGGACGAGGTCTGCGT
GAATCCCTACCACTACCAGAGGGTGGAGACCCCAGTTCTACCTCCTGTGTTGGTGCCACG
CCACACAGAGATCCCGGCCGAGTTCCCCCCGCTGGACGACTACAGCCATTCCATCCCTGA
AAACACTAACTTCCCCGCGGGCATCGAGCCCCAGAGCAATATTCCAGAAACCCCACCCCC
GGGCTACCTGAGTGAAGATGGAGAGACCAGCGACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGGAAGGAGGAGGGCAGCAGGGAGGCGAGGCTGCCGAGGCGGAGGGATCTGCGCATC
AAAGCGAGCGAGGCGAGCAAAGTTTGGCTGAGGGTTGGACTTTCCTTCCTGGAGGCGGCA
CCCAAACAGCCACCCCGTGCGGAAACCCAAACTTTCTTCTGCCACTCGGAGCCCCGCGGC
CGCCGCCTCCGCCCCGCGTCCGGGGCCTTCCCGATCCCGTGCCGCTGCCGCCCGCCCTTC
TCCCCGCCGCTCTTCTCCTCACCGAGGGAGCCGCCCGGGGCACAGGGCCGCACGCCGAGC
CCCGCAGGCTGCAGCGCCGCGGCCCGGCCGGGAGCACCGGCAAGTTCGCCGAGAGTTGAG
GCGAAGTTTGGGCGGCCGCGGCCAGCCCGGCCGAGCTCCCCGCTGCGCCCCCGGCGTTCC
GCCGCGCCCAGCCCCGCCGGGGGCGCCCCTCGCCGCCCGCGCGCCCTCCCCAGCCATGTC
GTCCATCCTGCCCTTCACGCCCCCGATCGTGAAACGCCTGCTGGGCTGGAAGAAGGGTGA
GCAGAACGGGCAGGAGGAGAAGTGGTGCGAGAAGGCGGTCAAGAGTTTGGTCAAGAAGCT
CAAGAAGACGGGGCAACTGGACGAACTGGAGAAGGCCATCACCACGCAGAACGTCAACAC
CAAGTGCATCACCATCCCCAGGTCCCTGGATGGCCGGCTGCAGGTGTCCCACCGGAAGGG
GCTCCCCCATGTCATCTACTGCCGCCTGTGGCGATGGCCTGACCTTCACAGCCACCATGA
GCTGCGGGCCATGGAGCTGTGTGAGTTCGCCTTCAACATGAAGAAGGACGAGGTCTGCGT
GAATCCCTACCACTACCAGAGGGTGGAGACCCCAGTTCTACCTCCTGTGTTGGTGCCACG
CCACACAGAGATCCCGGCCGAGTTCCCCCCGCTGGACGACTACAGCCATTCCATCCCTGA
AAACACTAACTTCCCCGCGGGCATCGAGCCCCAGAGCAATATTCCAGAAACCCCACCCCC
GGGCTACCTGAGTGAAGATGGAGAGACCAGCGACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9I9P8_BRARE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9I9P8_BRARE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               464-583, - strand, RNAz p=0.709833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-583, - strand, RNAz p=0.709833

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-683, gnl|bosTau2|chr10 (6442272-6441589)
               

               
               1-683, gnl|Hg17|chr15 (65145065-65145754)
               

               
               1-683, gnl|Mm7|chr9 (63786534-63785901)
               


               
               873-1007, gnl|bosTau2|chr10 (6341896-6341762)
               

               
               873-1007, gnl|Hg17|chr15 (65244642-65244776)
               

               
               873-1007, gnl|Mm7|chr9 (63696079-63695945)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-683, gnl|bosTau2|chr10 (6442272-6441589)
               

               
               1-683, gnl|Hg17|chr15 (65145065-65145754)
               

               
               1-683, gnl|Mm7|chr9 (63786534-63785901)
               


               
               873-1007, gnl|bosTau2|chr10 (6341896-6341762)
               

               
               873-1007, gnl|Hg17|chr15 (65244642-65244776)
               

               
               873-1007, gnl|Mm7|chr9 (63696079-63695945)

	1-683, gnl\|bosTau2\|chr10 (6442272-6441589)
	1-683, gnl\|Hg17\|chr15 (65145065-65145754)
	1-683, gnl\|Mm7\|chr9 (63786534-63785901)

	873-1007, gnl\|bosTau2\|chr10 (6341896-6341762)
	873-1007, gnl\|Hg17\|chr15 (65244642-65244776)
	873-1007, gnl\|Mm7\|chr9 (63696079-63695945)