Non-Coding RNA Search

Ss1.1-Pig4-TMW8045P08.5

Sequence:


               
               GGAAGGAGGCTTGCTGCCCCCTCACTCTTAGCCAGTATTCACATGCCCACCCCACCCCCA
AGAGATGCAGGACATCCCCACCACCACCACCACCCTGTGTGCTCTCAAGCCAGGACCTTT
TCCTTTGCCTGATATCCCTAGCTCTTTCCTGGTACCCAGCAAGACATCCCTTCCAGGGCA
GCATGGCATCTTTCAAGCTCTGTTACTATGGCAATGGCTGGGATGTTACAATCCCACTTG
TCTGGATAATCAAGTCGGAAGGGGAAGCGGAGGGAAATGGGGCCAGACAGATTCAGACTG
TTCTGTTCCCCCCGCCTTAAGGAAGGACTGAAGGGAAGCAACAGGAGCTTCTGCAACTGG
TTTTTATCAGAAAGATCGCCCTGCCTGCAGATGCCATCAAAGAAGCATGAGAAATTGCAG
CTGGAGAAGACTTATTAAAATGCCAGTATGTGACAGAGCAGAAAGAGCAGTCCGTTGGGA
TTCAGGCCTGGAATTCTGATTCCAAACTCTGCAGGATTTTGGGAAGTCCCTTCACCTCCC
TATAGCCATCTCCAGGGTGACAAACCCTAGTGTATTATCTACTGGAACCAGGGAAACTAA
CAATGTAGATTACTGGTGAATACCTGGACCGTTTTGTCAATTACACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAGGCTTGCTGCCCCCTCACTCTTAGCCAGTATTCACATGCCCACCCCACCCCCA
AGAGATGCAGGACATCCCCACCACCACCACCACCCTGTGTGCTCTCAAGCCAGGACCTTT
TCCTTTGCCTGATATCCCTAGCTCTTTCCTGGTACCCAGCAAGACATCCCTTCCAGGGCA
GCATGGCATCTTTCAAGCTCTGTTACTATGGCAATGGCTGGGATGTTACAATCCCACTTG
TCTGGATAATCAAGTCGGAAGGGGAAGCGGAGGGAAATGGGGCCAGACAGATTCAGACTG
TTCTGTTCCCCCCGCCTTAAGGAAGGACTGAAGGGAAGCAACAGGAGCTTCTGCAACTGG
TTTTTATCAGAAAGATCGCCCTGCCTGCAGATGCCATCAAAGAAGCATGAGAAATTGCAG
CTGGAGAAGACTTATTAAAATGCCAGTATGTGACAGAGCAGAAAGAGCAGTCCGTTGGGA
TTCAGGCCTGGAATTCTGATTCCAAACTCTGCAGGATTTTGGGAAGTCCCTTCACCTCCC
TATAGCCATCTCCAGGGTGACAAACCCTAGTGTATTATCTACTGGAACCAGGGAAACTAA
CAATGTAGATTACTGGTGAATACCTGGACCGTTTTGTCAATTACACTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               78-194, - strand, RNAz p=0.940065
               

               
               417-576, - strand, RNAz p=0.587933

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-194, - strand, RNAz p=0.940065
               

               
               417-576, - strand, RNAz p=0.587933

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-648, gnl|bosTau2|chr17 (33423069-33422421)
               

               
               5-648, gnl|Hg17|chr12 (115752797-115753428)
               

               
               5-648, gnl|Mm7|chr5 (117421214-117420670)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-648, gnl|bosTau2|chr17 (33423069-33422421)
               

               
               5-648, gnl|Hg17|chr12 (115752797-115753428)
               

               
               5-648, gnl|Mm7|chr5 (117421214-117420670)

	78-194, - strand, RNAz p=0.940065
	417-576, - strand, RNAz p=0.587933

	5-648, gnl\|bosTau2\|chr17 (33423069-33422421)
	5-648, gnl\|Hg17\|chr12 (115752797-115753428)
	5-648, gnl\|Mm7\|chr5 (117421214-117420670)