Non-Coding RNA Search

Ss1.1-Pig4-TMW8046A23.3

Sequence:


               
               CCAAGGCATCGCATGAGCCCTGGAGTGGCTGGAAGCCCACGAATCCCACCCAGTCAGTTT
TCCCCCGCAGGAAGCTTGCATTCCCCTGTGGGCGTTTGCAGCAGCACAGGAAATAGCCAT
AGCTACGCCAACAGTTCCCTCAATGCGCTTCAGGCCCTCAGCGAGGGGCACGGGGTCTCA
CTGGGGTCATCGTTGGCTTCACCGGACCTAAAAACGGGCAATTTGCAAAACTCCCCGGTT
AATATGAATCCTCCCCCACTCAGCAAGATGGGAAGCTTAGACTCCAAAGACTGTTTTGGA
CTTTATGGGGAGCCATCAGAAGGTACAACTGGACAAGCCGAGAGCAGCGGCCATCCTGGA
GAGCAGAAGGAGGCCGGGGAGCCCGGCCTGCCCCCAGCCGTGGGCAGCGAGAGGCCTGAT
GGCCAGAGCAGACTGCACGACAGCAAGGGCCAGACCAAACTCCTGCAGCTGTTGACCACC
AAATCCGACCAGATGGAGCCTTCGCCCTTAGCCAGCTCTTTGTCGGACGCAACCAAGGAC
TCCGTGGGCAGCCTGCCTGGTTCTGGGTCGACACACGGAACCTCGCTCAAGGAAAAGCAT
AAGATTTTGCACAGACTGTTGCAGGATAGCAGCTCTCCTGTGGACTTGGCGAAGTTAACT
GCGGAAGCCACAGGCAAAGAGCTGAACCAGGAGGCCAGCAGCACGGCCCCTGGATCCGAG
GTGACGATTAAGCAAGAGCCAGTGAGCCCCAAGAAGAAAGAGAATGCACTACTCCGCTAT
TTGCTCGATAAAGACGATACTAAAGATATCGGTTTACCGGAAATAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGGCATCGCATGAGCCCTGGAGTGGCTGGAAGCCCACGAATCCCACCCAGTCAGTTT
TCCCCCGCAGGAAGCTTGCATTCCCCTGTGGGCGTTTGCAGCAGCACAGGAAATAGCCAT
AGCTACGCCAACAGTTCCCTCAATGCGCTTCAGGCCCTCAGCGAGGGGCACGGGGTCTCA
CTGGGGTCATCGTTGGCTTCACCGGACCTAAAAACGGGCAATTTGCAAAACTCCCCGGTT
AATATGAATCCTCCCCCACTCAGCAAGATGGGAAGCTTAGACTCCAAAGACTGTTTTGGA
CTTTATGGGGAGCCATCAGAAGGTACAACTGGACAAGCCGAGAGCAGCGGCCATCCTGGA
GAGCAGAAGGAGGCCGGGGAGCCCGGCCTGCCCCCAGCCGTGGGCAGCGAGAGGCCTGAT
GGCCAGAGCAGACTGCACGACAGCAAGGGCCAGACCAAACTCCTGCAGCTGTTGACCACC
AAATCCGACCAGATGGAGCCTTCGCCCTTAGCCAGCTCTTTGTCGGACGCAACCAAGGAC
TCCGTGGGCAGCCTGCCTGGTTCTGGGTCGACACACGGAACCTCGCTCAAGGAAAAGCAT
AAGATTTTGCACAGACTGTTGCAGGATAGCAGCTCTCCTGTGGACTTGGCGAAGTTAACT
GCGGAAGCCACAGGCAAAGAGCTGAACCAGGAGGCCAGCAGCACGGCCCCTGGATCCGAG
GTGACGATTAAGCAAGAGCCAGTGAGCCCCAAGAAGAAAGAGAATGCACTACTCCGCTAT
TTGCTCGATAAAGACGATACTAAAGATATCGGTTTACCGGAAATAACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               600-759, - strand, RNAz p=0.938938

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               600-759, - strand, RNAz p=0.938938

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               607-701, + strand, RNAmicro p=0.993854

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               607-701, + strand, RNAmicro p=0.993854

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-828, gnl|bosTau2|chr14 (19719291-19720118)
               

               
               1-828, gnl|Hg17|chr8 (71231692-71230865)
               

               
               1-828, gnl|Mm7|chr1 (13321322-13320495)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr14 (19719291-19720118)
               

               
               1-828, gnl|Hg17|chr8 (71231692-71230865)
               

               
               1-828, gnl|Mm7|chr1 (13321322-13320495)

	1-828, gnl\|bosTau2\|chr14 (19719291-19720118)
	1-828, gnl\|Hg17\|chr8 (71231692-71230865)
	1-828, gnl\|Mm7\|chr1 (13321322-13320495)